Sequence of DPV Velvet tobacco mottle virus
Velvet tobacco mottle virus clone PMR24 RNA dependent RNA polymerase (RdRp) gene, partial cds; and coat protein (CP) gene, complete cds.
ACC No: JQ968543
Dated: 2013-04-05 | Length: 1049 | CRC: 1415313952
ID JQ968543; SV 1; linear; genomic RNA; STD; VRL; 1049 BP.
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AC JQ968543;
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DT 29-JUL-2012 (Rel. 113, Created)
DT 05-APR-2013 (Rel. 116, Last updated, Version 3)
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DE Velvet tobacco mottle virus clone PMR24 RNA dependent RNA polymerase (RdRp)
DE gene, partial cds; and coat protein (CP) gene, complete cds.
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KW .
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OS Velvet tobacco mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Sobemovirus.
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RN [1]
RP 1-1049
RX DOI; 10.1007/s11262-012-0801-2.
RX PUBMED; 22983896.
RA Arthur K., Collins N.C., Randles J.W.;
RT "Mutation rate in Velvet tobacco mottle virus varies between genomic region
RT and virus variant but is not influenced by obligatory mirid transmission";
RL Virus Genes 45(3):575-580(2012).
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RN [2]
RP 1-1049
RA Arthur K.R., Collins N.C., Randles J.W.;
RT ;
RL Submitted (22-APR-2012) to the INSDC.
RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd.,
RL Adelaide, SA 5064, Australia
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FH Key Location/Qualifiers
FH
FT source 1. .1049
FT /organism="Velvet tobacco mottle virus"
FT /isolate="VTMoV-R17"
FT /mol_type="genomic RNA"
FT /country="Australia"
FT /isolation_source="mechanical transmission 24 months"
FT /collected_by="Kieren Arthur"
FT /collection_date="Jul-2010"
FT /clone="PMR24"
FT /PCR_primers="fwd_name: vtmov-cpf5, fwd_seq:
FT gatttcccgcaacaagttttggctca, rev_name: vtmov-cpr4, rev_seq:
FT cgcttgcctagcggtcagtt"
FT /db_xref="taxon:12473"
FT gene <1. .448
FT /gene="RdRp"
FT CDS <1. .448
FT /codon_start=2
FT /gene="RdRp"
FT /product="RNA dependent RNA polymerase"
FT /db_xref="UniProtKB/TrEMBL:I7ARU5"
FT /protein_id="AFN89807.1"
FT /translation="ISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDY
FT CCQVGLVPDKTYWEEDHPADYVEETHQEPGQADDTGNLAERADFCSVPTTETPKVDAAR
FT AEFYSYGPNGWSCDIPEATHVNQWPLWGYSSSFGGGFGSPIRDY"
FT gene 198. .1043
FT /gene="CP"
FT CDS 198. .1043
FT /codon_start=1
FT /gene="CP"
FT /product="coat protein"
FT /db_xref="GOA:E2IZN3"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:E2IZN3"
FT /protein_id="AFN89808.1"
FT /translation="MSKKLTKNQVKQMIQATLPKEQTSARSRRRRRRRSTQQGQSSTVM
FT APMAGAVIYRKRPMLINGRSGVTVRHSEVVLVVQSGTTNFSATSVTLAPNTFTWLAVQG
FT SLYSKWRWISLRATYVPETASTTPGTVAMGFQYDNTDVLPTGTAGMSSLHGFVSGAPWS
FT GFSGSKLLAESPTTPIPAGAIATRLDCQNFGLKWYQYKSVIPAGDSGNIYIPAQLIVGT
FT LGTGSTLRYGEVHIQYEIEFIEPLPPSVNTLRDIYSRMILSSASDERKGEKSSQTLTDR
FT "
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SQ Sequence 1049 BP; 261 A; 256 C; 255 G; 277 T; 0 other;
jq968543 Length: 1049 05-APR-2013 Type: N Check: 8912 ..
1 gatttcccgc aacaagtttt ggctcacaag ctggcctaaa accttgtaca
51 ggttcctaga ctctccctct gaaaattttc atgatcttga aagggaactt
101 ggctcatgtc ccaagtgggc caagataaag gattattgtt gtcaggtagg
151 actggtccct gacaaaacat attgggaaga agatcaccct gctgactatg
201 tcgaagaaac tcaccaagaa ccaggtcaag cagatgatac aggcaacctt
251 gccgaaagag cagacttctg ctcggtcccg acgacggaga cgccgaaggt
301 cgacgcagca agggcagagt tctacagtta tggccccaat ggctggagct
351 gtgatatacc ggaagcgacc catgttaatc aatggccgct ctggggttac
401 agttcgtcat tcggaggtgg ttttggtagt ccaatccggg actactaact
451 tctcggccac ttctgttact ctcgcgccta acactttcac ctggttagct
501 gtacaaggat ccctctattc taaatggagg tggatatcgc ttagagccac
551 gtatgtgccc gaaaccgctt ctacgactcc cggaactgtg gcaatgggtt
601 tccagtatga caatactgat gtcctaccca ctggaaccgc tggtatgtct
651 agtttgcatg gttttgtgtc aggcgctccg tggtcaggct ttagtggttc
701 taaactcctc gctgaaagtc ccaccactcc catccctgct ggagcaatcg
751 caactcgact tgactgtcaa aatttcggtc tcaaatggta tcagtacaag
801 tctgttatac ctgctggtga ttctggaaac atctatattc cagctcagtt
851 gattgtcggt accctgggga ctggttcaac tttgagatat ggtgaagtgc
901 acatccagta tgagattgag tttattgagc cccttcctcc ttcggtgaac
951 actctcagag atatttactc taggatgatc ctaagttcgg cgtcagatga
1001 aaggaaaggt gagaagtcta gtcagacttt aactgaccgc taggcaagc