Sequence of DPV Iris yellow spot virus

Iris yellow spot virus isolate Brooks nucleocapsid protein (N) gene, complete cds.

ACC No: JQ973064

Dated: 2012-12-14 | Length: 822 | CRC: 722605444

                
ID   JQ973064; SV 1; linear; genomic RNA; STD; VRL; 822 BP.
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AC   JQ973064;
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DT   30-JUL-2012 (Rel. 113, Created)
DT   14-DEC-2012 (Rel. 115, Last updated, Version 2)
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DE   Iris yellow spot virus isolate Brooks nucleocapsid protein (N) gene,
DE   complete cds.
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KW   .
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OS   Iris yellow spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-822
RA   Bag S., Schwartz H.F., Pappu H.R.;
RT   "Identification and characterization of biologically distinct isolates of
RT   Iris yellow spot virus (genus Tospovirus, family Bunyaviridae), a serious
RT   pathogen of onion";
RL   Eur. J. Plant Pathol. 134(1):97-104(2012).
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RN   [2]
RP   1-822
RA   Bag S., Pappu H.R.;
RT   ;
RL   Submitted (24-APR-2012) to the INSDC.
RL   Plant Pathology, Washington State University, 100 Dairy Rd, Pullman, WA
RL   99163, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .822
FT                   /organism="Iris yellow spot virus"
FT                   /host="onion"
FT                   /isolate="Brooks"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:ID"
FT                   /collection_date="30-Sep-2008"
FT                   /db_xref="taxon:60456"
FT   gene            1. .822
FT                   /gene="N"
FT   CDS             1. .822
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:I7CPA4"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:I7CPA4"
FT                   /protein_id="AFO54482.1"
FT                   /translation="MSTARVKASEIERLLSGGDADVVIESDETEGFNFKNFVVANEGVR
FT                   MTFNNGYTILRNRAGIYKTIKSGKFTFQNKPIIIPSANVSPSQDDWTFRRLEGFIRARM
FT                   LVELLDTKNEKEKQKMYEKICGLPLVSAYGLKPSDKFDATTARIMLTLGGPLTLLASLD
FT                   SFAAAALPLAYFQNVKKGALGISRFSTYEQLCKVARVMAAKEFKFTDRYKKIFDETVKI
FT                   LTKCTPGTSGAASLVKFNEQIQILEGAFGKIVEDIGESSKPKNPSKNDRYS"
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SQ   Sequence 822 BP; 270 A; 155 C; 183 G; 214 T; 0 other;

jq973064 Length: 822  14-DEC-2012  Type: N  Check: 8707  ..

       1  atgtctactg caagggtaaa agcttcagaa attgagagac ttctctctgg
      51  tggagatgca gatgtggtaa ttgaatctga tgaaactgaa ggattcaatt
     101  tcaagaactt tgtggtggca aatgaaggtg tccgaatgac attcaataat
     151  ggttacacta ttcttagaaa cagagcaggt atctacaaga caataaaatc
     201  ggggaaattc acattccaaa acaaacctat tattattccc agtgctaatg
     251  tgagtcctag ccaggatgat tggacattta gaaggttaga aggctttatc
     301  agagccagaa tgctggtaga actgcttgac acaaagaacg aaaaggaaaa
     351  acagaaaatg tatgaaaaaa tctgcgggct tcctctggta agtgcatatg
     401  gtttgaagcc tagcgacaag tttgatgcaa ccacagccag gatcatgtta
     451  acactaggcg gtcctctcac cttactggca agtcttgaca gctttgctgc
     501  agctgctctt cctttggctt atttccagaa tgtgaaaaaa ggagcactcg
     551  gtataagcag attctcaact tatgagcagc tttgcaaagt tgcaagagtc
     601  atggcagcaa aggaattcaa gtttaccgac agatacaaga agatctttga
     651  tgaaactgta aagatcctga ctaaatgcac tcctggaact tcaggtgcag
     701  cttcattggt caagttcaac gaacagatcc aaattcttga aggtgctttc
     751  ggtaagattg ttgaagacat tggtgagtct tctaaaccca agaatccctc
     801  caagaacgac agatactcat ag