Sequence of DPV Maize chlorotic mottle virus
Maize chlorotic mottle virus isolate Yunnan3, complete genome.
ACC No: JQ982469
Dated: 2012-07-22 | Length: 4436 | CRC: -122203731
ID JQ982469; SV 1; linear; genomic RNA; STD; VRL; 4436 BP.
XX
AC JQ982469;
XX
DT 22-JUL-2012 (Rel. 113, Created)
DT 22-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE Maize chlorotic mottle virus isolate Yunnan3, complete genome.
XX
KW .
XX
OS Maize chlorotic mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Machlomovirus.
XX
RN [1]
RP 1-4436
RA Wang Q., Wu J., Hong J., Zhou X.;
RT "Infectivity of Maize Chlorotic Mottle Virus on Zea mays";
RL Unpublished.
XX
RN [2]
RP 1-4436
RA Wang Q., Wu J., Hong J., Zhou X.;
RT ;
RL Submitted (26-APR-2012) to the INSDC.
RL College of Agriculture and Biotechnolog, Zhejiang University, Institute of
RL Biotechnology, 388#, Yu Hang Tang Road, HangZhou, ZheJiang 3100558, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .4436
FT /organism="Maize chlorotic mottle virus"
FT /host="Zea mays"
FT /isolate="Yunnan3"
FT /mol_type="genomic RNA"
FT /country="China:Yuanjiang, Yunnan"
FT /collection_date="May-2010"
FT /PCR_primers="fwd_name: 5-f, fwd_seq:
FT aggtaatctgcggcaacagaccccaacg, rev_name: 3-r, rev_seq:
FT gggccggaagagaggggcattac"
FT /db_xref="taxon:12138"
FT misc_feature 118. .987
FT /note="similar to P32"
FT CDS 137. .3034
FT /codon_start=1
FT /transl_except=(pos:1451. .1453,aa:OTHER)
FT /product="P111"
FT /note="111kDa protein; read-through protein"
FT /protein_id="AFN69360.1"
FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITRIA
FT QQILRWPPYIRERMTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTTLLIPFRF
FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQTARDLSNPHGLWMSTRNKLTQTGGSVIQQTSRYVRLAVRFSLLAAGAYFSCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP
FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKNDKGELVSC
FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS
FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG
FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYTRIYGY
FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNTSLGNCILATAITHDFVTKL
FT GIPARLINNGDDNVMICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP
FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYA
FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE
FT EYFRSWTPTFEWSTTGILAEIPECLLLKHNPLPPT"
FT CDS 137. .1453
FT /codon_start=1
FT /product="P50"
FT /note="50 kDa protein; putative replicase"
FT /protein_id="AFN69361.1"
FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITRIA
FT QQILRWPPYIRERMTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTTLLIPFRF
FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQTARDLSNPHGLWMSTRNKLTQTGGSVIQQTSRYVRLAVRFSLLAAGAYFSCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK"
FT CDS 2995. .3834
FT /codon_start=1
FT /transl_except=(pos:3199. .3201,aa:OTHER)
FT /product="P31"
FT /note="31kDa protein; read-through protein"
FT /protein_id="AFN69362.1"
FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRIVLASVVKEFNLGDFDLLDSVHLDENTG
FT HRCRLSRAIGVLDRSNAKIPKDRHTQWRQVAGLPEVESSADVAWKQNPELFEPTRLSLD
FT PTRSETVPHLREPPAPCPKFCLQCQQQLLTKFSRFQCAQGLTSQLERHPDTLGRPNGWQ
FT HNHRCGTQLCSTLCASLGKHSQQTPLADTFPWHSSLITCYQYPLGWRMLPGSCPQLQ"
FT CDS 2995. .3201
FT /codon_start=1
FT /product="P7"
FT /note="7kDa protein"
FT /protein_id="AFN69363.1"
FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFN"
FT CDS 3384. .4094
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AFN69364.1"
FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG
FT TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTPPRYIGAAKWLAAQSQMWNTIVFN
FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ
FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI
FT LQPALVPGPGLANH"
XX
SQ Sequence 4436 BP; 1199 A; 1117 C; 1117 G; 1003 T; 0 other;
jq982469 Length: 4436 22-JUL-2012 Type: N Check: 3096 ..
1 aggtaatctg cggcaacaga ccccaacgcg ctaaacacga ccttacagtt
51 gactcacgtc ttgcatcctg tgagagcttt agcgtgggaa tttgcccctg
101 actggcaatc aggtttcatg ccctctccgt gcacatatgg cgaccctacc
151 ttcaattcac gcattttgga agctgtggtg gccgacgttc tcggaggaac
201 ggaagatgac ggtggtccaa gccttgagga atggtttgac gcgcaaactc
251 tttcagatta cacgaattgc gcaacagatc ctccgatggc caccgtacat
301 acgcgagaga atgacatcaa gtcttggacg gagcttagtg aaaactttcc
351 agaccttgtt aggtatccgg aaagtcttgt cgaaactctg cttgacacgg
401 aacatgaatg tggacatttt tacgacgctc ctgattcctt tcagatttct
451 gtcacagcta tgttcacaga tcgttgcaag tgccaggcat gtgatccaga
501 ctttcaagca cggtctctct cgcgggctct gcttggcccg ttgccggaat
551 ccggagacga tgcggagtgg atggagcaag catacactcc agatgcagaa
601 ttgttcgtca acgagcccac tgatgacccc attccaacca cagactgcaa
651 gagacctatc caacccacat ggtctgtgga tgtctactcg aaacaagttg
701 actcagactg ggggctcagt gattcaacaa acgtcacggt acgttcggct
751 agcagttcgc ttctccctgc tggccgcggg ggcatatttt tcatgtgtcc
801 tcgcccggaa ggcattgaaa gagtatgtct acaggtggga gctaaaatcc
851 gatcaggaac tcccaactcg ggaacagtca caaatctccc aggtggaaca
901 ggctatggaa cagaatggag cgatgatggt tatgaaactc aatggtccga
951 cggcccctat tctatccctc caggactgtc tgactaaaca cgttctggtt
1001 ccagagattg tggacgaaga aggcacagtg acacaaaaag agcagtccac
1051 atttctcatc cgtgagtttg gccctgccgt cagaaaccta gtgaccctcg
1101 caaaactaga attcggcggg attccaaaga aaaccactgc caacgagctc
1151 acggtttggc ggttcctggt acggaagtgt gagcaagcaa atatgaatcc
1201 aactgactcc cgtactgcca tttcaatggc cctgccatat gtgtttatgc
1251 cgtgccgtac tgatgttgga agagcttcaa ttccactgcg tgatgaatcc
1301 attgagatct gtcgccaata tcgcgcacaa tttgtggagg agacacccct
1351 acggcgagta ttcaacaacc cactgagcgg aaaagcatgg cgtaattggg
1401 ttaggcacct gggtgggctg gatgatccag ccctattcca ggagctgaaa
1451 taggggtgtc ttgaagagtg gcttggggtg cagtctcggc gcacacgtgc
1501 gcggcatccc aaactccgta gccactttaa agacacgaga cacaaaaccc
1551 gcagagtgtt ccggattgca ggtttgggca acctgtatga atttggggtc
1601 cacaacaact ctgcggttaa cctggaacgt ggactgatgg aacgagtatt
1651 ttatgtgaaa aatgataagg gggaactcgt ttcatgccct gagccaatta
1701 gtgggatatt ttggaaaaat ttgaagggat tcagaaatag cattgttcac
1751 catgtgggac acagacatcc ggtgtcacga gagacgtttc tcgcttacta
1801 tacagggcca aagcgcacca tgtatgagaa agcggtgaat tccctctacg
1851 aaatgcctgt ctcatacgac gatgctaaac tgaaaacatt tgtcaaagca
1901 gaaaagatca atctcactaa gaaagctgat cctgtaccac gtgtgatcca
1951 accccgtgct ccccggtaca atgtggaact gggtaggtat ttgagaccgg
2001 ttgagcaccc aatctaccat gccatagaca agatttgggg tggtccgact
2051 atcatgaaag gttactcggt tgaacagatt ggaagacaca tcgaaaacgc
2101 gtttcgatcg ttcaccgatc cagtagccat tggatttgat gcaagtcggt
2151 ttgatcaaca cgtgagtgtt gaagctctac gctgggaaca tagcgtatac
2201 acaaggattt atggctatcc agagcttctc acacaattgc tgcggtggca
2251 gattcataat cgtggaacag catacgcttc agacggcgcg tttaactacc
2301 aggtggatgg taaacgcatg agtggagaca tgaacacatc attgggcaat
2351 tgcatcctgg ccacagcaat cacacatgac ttcgtgacca agctgggaat
2401 tccagccaga ttaatcaaca atggagatga caacgtcatg atctgtccgg
2451 cagtggaggt aggcagagtc agacaggaac tgtacagaca ttggttgaac
2501 tacggatttg aagtcatatc agaagaacct gtatacatcc ttgaacaggt
2551 tgagttttgc cagatgcgac cagtctttga cggtacacaa tacaccatga
2601 tgagagaccc acgcaccacc atgtccaagg atgcatatgc tgttacccct
2651 tttaacacgc caaccgcagc aaggaggtgg atgagagcag ttggggaatg
2701 cggactcagc cttacaggag gcctccccgt aaagcaggaa tactatgctg
2751 ctctcgtgaa acacggacta gatccgaaaa acattaaaca gggaaaagac
2801 tttgacagtg ggctatatta tcttagcaag ctatccaatc gcaaatggca
2851 ggaggtccaa gagagcgctc gttattcatt ctggcttgct ttcgggtaca
2901 caccagatga acaacgagcg ttagaggagt attttagatc ttggactcct
2951 acgtttgaat ggtccacaac gggtattttg gcagaaatcc ccgaatgtct
3001 tcttctcaaa cacaatcccc tcccaccgac gtagcccgca gacaacagac
3051 cggcactgcc gtgcgatccg aagataacca tcgcaatcag ttggaaaaca
3101 ttgctgttgg aaaactcacc aaatctgaag gagcacccgc ccaacagaac
3151 gtgatcattg caaaagaggt ggttatcaat aaccacttca atttcaactg
3201 agctggagtg tgtgtgtgta gaatcgtcct ggcctcagtg gttaaggaat
3251 ttaatcttgg ggattttgat ctcctcgatt ctgttcatct tgacgaaaac
3301 acaggacacc gttgccgttt atcacgagcc atcggtgtac tcgatcgatc
3351 aaacgcaaaa attccaaaag atcgacatac acaatggcgg caagtagccg
3401 gtctacccga ggtagaaagc agcgcggacg tagcgtggaa gcaaaatcca
3451 gagctattcg agccaacccg cctgtccctc gacccaaccc gcagcgaaac
3501 cgtcccccac ctgcgggaac cacctgctcc atgtccgaaa ttctgcttgc
3551 agtgtcagca acaactgctg accaaattct cgagattcca gtgtgcgcag
3601 ggattgactt cccagctgga acgccacccc gatacattgg ggcggccaaa
3651 tggctggcag cacaatcaca gatgtggaac acaattgtgt tcaactctgt
3701 gcgcatcact tgggaaacat tcacagcaga caccactagc ggatacattt
3751 ccatggcatt cctctctgat tacatgctat caatacccac tggggtggag
3801 gatgttgcca ggatcgtgcc ctcagctaca atagctctga agaatagagg
3851 gccgtccatt gttatgccac aaaaccgcac tgtgttcagg tgcatacagg
3901 ctggtcagtt tgctgcgttg ggcagcgcgg ctgacaagca aatgtattct
3951 cccggacgat tcattgtggc tatccccaaa gctagtgcaa cacaagcggt
4001 aggccaaatc aaaatctcgt actccgtgtc ctaccgtgga gcagcaatcc
4051 tacaacctgc cctggttcca ggcccagggc tggcaaatca ttgagcataa
4101 ggtgagccgg catgaggttg caagaccgga acaaccagtc cttctggcag
4151 agccctgcca atccaaagtg tctgggagcc taaatcgtat actagtagtt
4201 tgcgtgatga ccatgactgg agagtgggcg gcggctgcca accgcagact
4251 gggcgtatat agtaagcctt gacccaccca tggaaaacac gtatttacga
4301 acggtacgac atggtaactg gatacactta accctggggc aagtagatgc
4351 taggaaacta gcatcgggcc gcccacgagg gtttctgaac tcaacggagt
4401 agaacggggg ggggtaatgc ccctctcttc cggccc