Sequence of DPV Heartland virus

Heartland virus isolate Patient1 segment S, complete sequence.

ACC No: JX005842

Dated: 2012-09-03 | Length: 1772 | CRC: -1654454698

                
ID   JX005842; SV 1; linear; genomic RNA; STD; VRL; 1772 BP.
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AC   JX005842;
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DT   03-SEP-2012 (Rel. 114, Created)
DT   03-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Heartland virus isolate Patient1 segment S, complete sequence.
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KW   .
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OS   Heartland virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
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RN   [1]
RP   1-1772
RA   McMullan L.K., Folk S.M., Kelly A.J., MacNeil A., Goldsmith C.S.,
RA   Metcalfe M.G., Batten B.C., Albarino C.G., Zaki S.R., Rollin P.E.,
RA   Nicholson W.L., Nichol S.T.;
RT   "A newly discovered phlebovirus associated with severe febrile illness
RT   following tick bite in two patients in Missouri";
RL   N. Engl. J. Med. 367:834-841(2012).
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RN   [2]
RP   1-1772
RA   McMullan L.K., Folk S.M., Kelly A.J., MacNeil A., Goldsmith C.S.,
RA   Metcalfe M.G., Batten B.C., Albarino C.G., Zaki S.R., Rollin P.E.,
RA   Nicholson W.L., Nichol S.T.;
RT   ;
RL   Submitted (01-MAY-2012) to the INSDC.
RL   Virus Special Pathogens Branch, Centers for Disease Control and Prevention,
RL   1600 Clifton Rd MS G14, Atlanta, GA 30333, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1772
FT                   /organism="Heartland virus"
FT                   /segment="S"
FT                   /host="Homo sapiens"
FT                   /isolate="Patient1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Missouri"
FT                   /isolation_source="Human serum"
FT                   /collection_date="19-Jun-2009"
FT                   /db_xref="taxon:1216928"
FT   gene            30. .929
FT                   /gene="NSs"
FT   CDS             30. .929
FT                   /codon_start=1
FT                   /gene="NSs"
FT                   /product="nonstructural S"
FT                   /protein_id="AFP33390.1"
FT                   /translation="MSLSKASQPSVKSACVRLPIVVLEPNLAELSTSYVGLVSCKCSVL
FT                   TCSMMRKMKAFTNTVWLFGNPNNPLHALEPAVEQLLDEYSGDLGSYSQQEKSALRWPSG
FT                   KPSVHFLQAAHLFFSLKNTWAVETGQENWRGFFHRITSGKKYKFEGDMVIDSCYKIDER
FT                   RRRMGLPDTFITGLNPIMDVALLQIESLLRVRGLTLNYHLFTSSFLDKPLLDSLYFAIW
FT                   RDKKKDDGSYSQDEGARQDDPLNPLDELLYLSDLPKPLAHYLNKCPLHNIIMHDEEVRE
FT                   AYLNPIWGKDWPALSSSP"
FT   gene            complement(1006. .1743)
FT                   /gene="NP"
FT   CDS             complement(1006. .1743)
FT                   /codon_start=1
FT                   /gene="NP"
FT                   /product="nucleoprotein"
FT                   /protein_id="AFP33389.1"
FT                   /translation="MTDWSAIAVEIGNEPLDVPALVEFAKEIAYEGLDPAVIFGLLRER
FT                   GGENWRNDVKYIIVFALTRGNKIVKACGKMSKKGAERMTNLARVYELKENAVDRMAVTP
FT                   VRVAQCLPTWTCAAAAAIKEYLPVGPAIMHNKIQGYPLEMMCMAFGSLIPQADVSIEVI
FT                   KDFMDAYSLWQDTFARTINVDQRKMTKAEVYAKFRDPLHAAVNSLFFPNATRISWLQAK
FT                   GLLTATKEASGSVKAAAAAYRNM"
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SQ   Sequence 1772 BP; 442 A; 454 C; 394 G; 482 T; 0 other;

jx005842 Length: 1772  03-SEP-2012  Type: N  Check: 4974  ..

       1  acacaaagaa ccccttgaat tatcaaaaca tgtccttgtc taaagcctct
      51  cagcccagcg tcaagagtgc ctgcgttagg cttcccatcg tggttcttga
     101  gcctaatctg gccgagctca gcacctcata tgttggcctg gtctcatgta
     151  agtgctcagt tcttacatgc tccatgatga ggaaaatgaa ggccttcacc
     201  aatactgtct ggctgtttgg caatcccaac aatcctctac atgctctaga
     251  gccagctgtt gagcaacttc ttgatgagta ctctggggac ttaggctctt
     301  atagccagca ggagaagagt gcattgaggt ggccgagtgg gaaaccgtca
     351  gtccatttct tgcaggctgc tcatttattc ttctccctca agaacacctg
     401  ggcagtcgag acaggtcagg aaaattggag aggtttcttc cacaggataa
     451  catctgggaa aaaatacaaa ttcgaggggg acatggtcat tgactcttgc
     501  tacaaaattg atgagagacg taggcgaatg ggtctgcctg atactttcat
     551  aacaggactg aacccaataa tggatgtggc tctcctccaa attgagtcac
     601  ttttgcgtgt taggggtctc acactcaact atcacctttt cacatcatcc
     651  ttccttgaca agcctctcct tgattcctta tattttgcca tctggagaga
     701  caaaaagaaa gatgatgggt catattccca agatgagggg gcccgccagg
     751  atgaccctct caaccccttg gatgagctct tgtacctgtc tgacttgccc
     801  aaaccactag cacattatct aaataaatgc cctctccata atataatcat
     851  gcatgatgag gaggtcagag aggcctatct aaatcccatc tggggaaagg
     901  actggccagc actttccagc tccccttagg gggagctaat ttagatcgaa
     951  ttcatttgat ttgaccaatt ggaatttagc gccaaattca aaatttatca
    1001  gctgcttaca tgtttctgta agcagcagct gcagccttca ctgagccgga
    1051  tgcttccttg gttgctgtga gcaagccctt ggcctgcagc cagctgatcc
    1101  tggtggcatt tgggaagaag agggaattga cagctgcatg cagagggtct
    1151  ctgaatttgg catacacctc tgcctttgtc atcttccttt ggtccacatt
    1201  gattgttcga gcaaatgtgt cttgccaaag ggagtaggca tccatgaagt
    1251  cctttatgac ttcaattgag acatctgcct gtgggatcaa tgagccaaag
    1301  gccatgcaca tcatttccag tggataacct tggatcttgt tgtgcatgat
    1351  tgctggccca acagggaggt actccttgat tgctgctgca gcagcacagg
    1401  tccaggttgg caggcactgg gcaactctca ctggtgtcac agccattctg
    1451  tcaacagcat tctccttcag ctcatagact ctagccaggt ttgtcatcct
    1501  ctcagcgcct ttcttagaca tcttgccaca tgctttcact atcttgttcc
    1551  ctctagtgag agcaaataca atgatgtact tcacatcatt cctccagttc
    1601  tcaccccccc tctcacgaag cagcccaaag atcacagcag gatccaggcc
    1651  ctcataagct atctcctttg caaactcgac caaagctgga acatccagtg
    1701  gctcgttgcc aatctcaaca gctattgcag accagtcagt catgcttgat
    1751  gattcaaagg ggttctctgt gt