Sequence of DPV Heartland virus
Heartland virus isolate Patient1 segment M, complete sequence.
ACC No: JX005844
Dated: 2012-09-03 | Length: 3427 | CRC: 103689521
ID JX005844; SV 1; linear; genomic RNA; STD; VRL; 3427 BP.
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AC JX005844;
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DT 03-SEP-2012 (Rel. 114, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE Heartland virus isolate Patient1 segment M, complete sequence.
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KW .
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OS Heartland virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
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RN [1]
RP 1-3427
RA McMullan L.K., Folk S.M., Kelly A.J., MacNeil A., Goldsmith C.S.,
RA Metcalfe M.G., Batten B.C., Albarino C.G., Zaki S.R., Rollin P.E.,
RA Nicholson W.L., Nichol S.T.;
RT "A newly discovered phlebovirus associated with severe febrile illness
RT following tick bite in two patients in Missouri";
RL N. Engl. J. Med. 367:834-841(2012).
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RN [2]
RP 1-3427
RA McMullan L.K., Folk S.M., Kelly A.J., MacNeil A., Goldsmith C.S.,
RA Metcalfe M.G., Batten B.C., Albarino C.G., Zaki S.R., Rollin P.E.,
RA Nicholson W.L., Nichol S.T.;
RT ;
RL Submitted (01-MAY-2012) to the INSDC.
RL Virus Special Pathogens Branch, Centers for Disease Control and Prevention,
RL 1600 Clifton Rd MS G14, Atlanta, GA 30333, USA
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FH Key Location/Qualifiers
FH
FT source 1. .3427
FT /organism="Heartland virus"
FT /segment="M"
FT /host="Homo sapiens"
FT /isolate="Patient1"
FT /mol_type="genomic RNA"
FT /country="USA:Missouri"
FT /isolation_source="Human serum"
FT /collection_date="19-Jun-2009"
FT /db_xref="taxon:1216928"
FT CDS 51. .3281
FT /codon_start=1
FT /product="glycoprotein polyprotein"
FT /protein_id="AFP33393.1"
FT /translation="MIVPIVLFLTLCPSELSAWGSPGDPIVCGVRTETNKSIQIEWKEG
FT RSEKLCQIDRLGHVTSWLRNHSSFQGLIGQVKGRPSVSYFPEGASYPRWSGLLSPCDAE
FT WLGLIAVSKAGDTDMIVPGPTYKGKIFVERPTYNGYKGWGCADGKSLSHSGTYCETDSS
FT VSSGLIQGDRVLWVGEVVCQRGTPVPEDVFSELVSLSQSEFPDVCKIDGVALNQCEQES
FT IPQPLDVAWIDVGRSHKVLMREHKTKWVQESSAKDFVCFKVGQGPCSKQEEDDCMSKGN
FT CHGDEVFCRMAGCSARMQDNQEGCRCELLQKPGEIIVNYGGVSVRPTCYGFSRMMATLE
FT VHKPDRELTGCTGCHLECIEGGVKIVTLTSELRSATVCASHFCASAKGGSKTTDILFHT
FT GALVGPNSIRITGQLLDGSKFSFDGHCIFPDGCMALDCTFCKEFLRNPQCYPVKKWLFL
FT VVVIMCCYCALMLLTNILRAIGVWGTWVFAPIKLALALGLRLAKLSKKGLVAVVTRGQM
FT IVNDELHQVRVERGEQNEGRQGYGPRGPIRHWLYSPALILILTTSICSGCDELVHAESK
FT SITCKSASGNEKECSVTGRALLPAVNPGQEACLHFSVPGSPDSKCLKIKVKSINLRCKQ
FT ASSYYVPEAKARCTSVRRCRWAGDCQSGCPTYFSSNSFSDDWANRMDRAGLGMSGCSDG
FT CGGAACGCFNAAPSCIFWRKWVENPSNRVWKVSPCASWVLAATIELTLPSGEVKTLEPV
FT TGQATQMFKGVAITYLGSSIEIVGMTRLCEMKEMGTGIMALAPCNDPGHAIMGNVGEIQ
FT CSSIESAKHIRSDGCIWNADLVGIELRVDDAVCFSKLTSVEAVANFSKIPATISGVRFD
FT QGNHGESRIYGSPLDITRVSGEFSVSFRGMRLKLSEISASCTGEITNVSGCYSCMTGAS
FT VSIKLHSSKNTTGHLKCDSDETAFSVMEGTHTYRPHMSFDKAVIDEECVLNCGGHSSKL
FT LLKGSLVFMDVPRFVDGSYVQTYHSKVPAGGRVPNPVDWLNALFGDGITRWILGIIGVL
FT LACVMLFVVVVAITRRLIKGLTQRAKVA"
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SQ Sequence 3427 BP; 920 A; 668 C; 969 G; 870 T; 0 other;
jx005844 Length: 3427 03-SEP-2012 Type: N Check: 6485 ..
1 acacagagac ggctatacat taaagtagag gtaaaccgta atccactgag
51 atgattgtcc cgattgtcct gtttctcacg ctctgtccgt ccgaactcag
101 tgcctggggc tccccaggag accctattgt ttgtggtgtg aggactgaaa
151 caaacaaatc cattcagatt gagtggaagg agggaagatc agagaagcta
201 tgccagattg acaggcttgg gcatgtcaca agctggttaa gaaaccactc
251 atctttccag gggcttattg gtcaggtgaa ggggagacca agtgtttcct
301 acttcccgga aggggcttct tacccaaggt ggagcggcct attaagccca
351 tgtgatgctg aatggctggg actgatagca gtgagcaagg ctggagacac
401 agacatgatt gtcccaggcc caacttacaa agggaaaatc tttgttgaga
451 gaccaacata caacggttac aaaggctggg gttgtgcaga tggaaagtca
501 ctaagccact caggcacata ttgtgaaact gacagctcag tgagttctgg
551 tttaattcag ggagataggg ttctctgggt tggggaagta gtctgtcaga
601 gagggacccc tgtgccagaa gatgtattta gtgaactggt tagcttgagt
651 caaagtgagt tcccagatgt gtgcaagatt gatggtgttg cactgaacca
701 gtgtgagcag gagagcatcc cccagccact ggacgttgca tggattgatg
751 ttggaaggtc tcataaggta ctgatgagag aacacaaaac taaatgggtc
801 caagagagct cagcaaagga ctttgtgtgt ttcaaggtgg gtcaggggcc
851 atgttcgaaa caagaggaag atgactgcat gagtaagggc aactgccatg
901 gggatgaggt tttctgcagg atggcaggat gctctgcccg tatgcaagat
951 aatcaagaag gctgcaggtg cgaactgctt caaaaacctg gagaaatcat
1001 tgtgaattat ggaggcgtct ctgtgagacc aacctgttat ggattctcca
1051 gaatgatggc aacattggaa gttcacaaac ctgatagaga attaacaggg
1101 tgcacgggtt gtcacctaga gtgcatagag ggaggagtta aaattgtaac
1151 gcttacaagc gagctgagaa gtgcaacagt ttgtgcttca catttttgtg
1201 catctgcaaa ggggggctca aagacaactg acatactctt ccacactggt
1251 gctctcgttg gacccaattc cattagaata actggtcagt tgttagatgg
1301 gagcaagttc tcctttgatg ggcactgcat attcccagat gggtgcatgg
1351 ctcttgactg caccttctgt aaagagttcc tgagaaaccc gcaatgttac
1401 cctgtaaaga aatggctctt cctggtggta gttataatgt gctgctattg
1451 tgccctgatg ctgcttacta acatactgag agctataggt gtttggggga
1501 catgggtttt tgctccaata aagttggctc tagcattagg gttgaggctt
1551 gccaaactgt caaagaaggg gctggttgct gtggttacaa ggggccaaat
1601 gatcgtgaat gatgagctgc accaggttcg agtggagaga ggtgagcaaa
1651 atgagggaag acaaggttat ggcccaagag gccccatccg tcactggcta
1701 tactcacctg ccctcattct cattctcacc acttcaattt gctctggatg
1751 tgatgagctt gttcatgctg agagtaaatc catcacatgc aagtctgcat
1801 ctgggaatga gaaggagtgc tcagtgacag gcagagcttt gctcccagct
1851 gtcaatccag ggcaggaggc ctgcttgcac tttagcgtgc caggaagccc
1901 agactccaag tgccttaaga tcaaagtgaa atcaataaat ctcagatgta
1951 agcaagcctc ttcatattat gttcctgaag caaaggcaag atgtacatct
2001 gtcagaaggt gcaggtgggc aggtgactgt caatctgggt gtccaacata
2051 tttcagctca aactcattct cagatgattg ggcaaacagg atggacaggg
2101 ctgggctcgg gatgagtggg tgctcagatg ggtgtggtgg agctgcatgt
2151 gggtgtttta atgcagcgcc atcctgcatc ttttggagaa agtgggtgga
2201 gaacccatcc aatcgtgtct ggaaggtgtc accttgtgca tcatgggtgc
2251 tagctgcaac cattgagttg actttgccat caggagaggt taagactcta
2301 gagcctgtca cagggcaagc aactcagatg ttcaagggtg ttgcaatcac
2351 atatctggga tcatccattg agattgttgg catgaccagg ctatgtgaga
2401 tgaaagagat ggggactggg ataatggcac tggccccctg caatgatcca
2451 gggcacgcca taatgggaaa tgtgggtgag atccaatgca gtagtataga
2501 aagcgcaaag cacatcaggt ctgatgggtg catttggaat gctgacctag
2551 ttggaataga attgagggtt gatgatgctg tgtgtttctc gaaactcact
2601 agtgttgagg cagttgcaaa tttttcaaaa atcccggcaa caatttctgg
2651 ggttcgcttt gatcaaggga atcatggaga atcacgtatc tatggtagcc
2701 cattagatat cacgagggtt agtggggaat tctcagtgtc attcagaggg
2751 atgaggctca aactatctga gatatcagca agctgcacag gtgagataac
2801 aaacgtctct ggttgttact cctgcatgac tggggcctca gtcagcataa
2851 aattacatag cagtaagaac acaacaggtc atcttaagtg tgattcagat
2901 gagactgcat tcagtgtcat ggagggaaca cacacatata ggcctcacat
2951 gagctttgat aaagcagtaa tagatgagga gtgtgtgcta aactgtggtg
3001 gccactcatc aaaactgttg cttaaaggga gccttgtttt tatggacgtg
3051 ccaaggtttg ttgatggaag ttatgtccaa acatatcaca gcaaggtgcc
3101 cgctggggga agggtcccaa atccggtaga ctggctcaac gcactgtttg
3151 gagatggcat aacacgatgg attcttggga ttataggggt tctgctggca
3201 tgtgtcatgc tatttgtggt ggtggttgcc atcactaggc gattgatcaa
3251 gggactgact caaagggcga aggtggcatg attggcgtta attgacaaat
3301 aagcaagcct cctgtttcaa acctctggtg ggccagaagc ctgacagagg
3351 tttgaaacaa atgctctgac atctgaggca tgaatgataa tgggtgggtt
3401 ttcaatttgt atagccggtc tttgtgt