Sequence of DPV Heartland virus
Heartland virus isolate Patient1 segment L, complete sequence.
ACC No: JX005846
Dated: 2012-09-03 | Length: 6368 | CRC: -49825016
ID JX005846; SV 1; linear; genomic RNA; STD; VRL; 6368 BP.
XX
AC JX005846;
XX
DT 03-SEP-2012 (Rel. 114, Created)
DT 03-SEP-2012 (Rel. 114, Last updated, Version 1)
XX
DE Heartland virus isolate Patient1 segment L, complete sequence.
XX
KW .
XX
OS Heartland virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RP 1-6368
RA McMullan L.K., Folk S.M., Kelly A.J., MacNeil A., Goldsmith C.S.,
RA Metcalfe M.G., Batten B.C., Albarino C.G., Zaki S.R., Rollin P.E.,
RA Nicholson W.L., Nichol S.T.;
RT "A newly discovered phlebovirus associated with severe febrile illness
RT following tick bite in two patients in Missouri";
RL N. Engl. J. Med. 367:834-841(2012).
XX
RN [2]
RP 1-6368
RA McMullan L.K., Folk S.M., Kelly A.J., MacNeil A., Goldsmith C.S.,
RA Metcalfe M.G., Batten B.C., Albarino C.G., Zaki S.R., Rollin P.E.,
RA Nicholson W.L., Nichol S.T.;
RT ;
RL Submitted (01-MAY-2012) to the INSDC.
RL Virus Special Pathogens Branch, Centers for Disease Control and Prevention,
RL 1600 Clifton Rd MS G14, Atlanta, GA 30333, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6368
FT /organism="Heartland virus"
FT /segment="L"
FT /host="Homo sapiens"
FT /isolate="Patient1"
FT /mol_type="genomic RNA"
FT /country="USA:Missouri"
FT /isolation_source="Human serum"
FT /collection_date="19-Jun-2009"
FT /db_xref="taxon:1216928"
FT CDS 17. .6271
FT /codon_start=1
FT /product="polymerase"
FT /protein_id="AFP33395.1"
FT /translation="MNLEALCSRVLSERGLSTGEPGVYDQIFERPGLPNLEVTVDSTGV
FT VVDVGAIPDSASQLGSSINAGVLTIPLSEAYKINHDFTFSGLTKTTDRKLSEVFPLVHD
FT GSDSMTPDVIHTRLDGTVVVIEFTTTRSTNMGGLEAAYRSKLEKYRDPLNRRTDIMPDA
FT SIYFGIIVVSASGVLTNMPLTQDEAEELMFRFCVANEIYSQARAMDAEVELQKSEEEYE
FT AISRARAFFTLFDYDDGKLSEAFPNSDIEMLRRFLSQPVDTSFVTTTLKEKEQEAYKRM
FT CEEHYLKSGMSTKERLEANRSDAIDKTRALMERLHNMSSKELHSNKSTVKLPPWVVKPS
FT DRTLDVKTDTGSGELLNHGPYGELWSRCFLEIVLGNVEGVISSPEKELEIAISDDPEAD
FT TPKAAKIKYHRFRPELSLESKHEFSLQGIEGKRWKHSARNVLKDEMSHKTMSPFVDVSN
FT IEEFLIMNNLLNDTSFNREGLQETINLLLEKATEMHQNGLSTALNDSFKRNFNTNVVQW
FT SMWVSCLAQELASALKQHCKPGEFIIKKLMHWPIFVIIKPTKSSSHIFYSLAIKKANIK
FT RRLIGDVFTDTIDAGEWEFSEFKSLKTCKLTNLINLPCTMLNSIAFWREKMGVAPWISR
FT KACSELREQVAITFLMSLEDKSTTEELVTLTRYSQMEGFVSPPLLPKPQKMVEKLEVPL
FT RTKLQVFLFRRHLDAIVRVAASPFPIVARDGRVEWTGTFNAITGRSTGLENMVNNWYIG
FT YYKNKEESTELNALGEMYKKIVEIEAEKPTSSEYLGWGDTSSPKRHEFSRSFLKSACIS
FT LEKEIEMRHGKSWKQSLEERVLKELGSKNLLDLATMKATSNFSKEWEAFSEVRTKEYHR
FT SKLLEKMAELIEHGLMWYVDAAGHAWKAVLDDKCMRICLFKKNQHGGLREIYVTNANAR
FT LVQFGVETMARCVCELSPHETIANPRLKSSIIENHGLKSARQLGQGTINVNSSNDAKKW
FT SQGHYTTKLAMVLCWFMPAKFHRFIWAGISMFRCKKMMMDLRFLEKLSTKANQKTDDDF
FT RKDLAGAFHGNVEVPWMTQGATYLQTETGMMQGILHFTSSLLHSCVQSFYKAYFLSRLK
FT EGIAGRTIKAAIDVLEGSDDSAIMISLKPASDNEEAMARFLTANLLYSVRVINPLFGIY
FT SSEKSTVNTLFCVEYNSEFHFHKHLVRPTIRWVAASHQISESEALASRQEDYANLLTQC
FT LEGGSSFSLTYLIQCAQLVHHYMLLGLCLHPLFGTFVGMLIEDPDPALGFFIMDNPAFA
FT GGAGFRFNLWRSCKFTNLGKKYAFFFNEIQGKTKGDADYRALDATTGGTLSHSVMTYWG
FT DRRKYQHLLDRMGLPKDWVERIDENPSILYRRPENKQELILRLAEKVHSPGVTSSFSKG
FT HVVPRVVAAGVYLLSRHCFRYTASIHGRGASQKASLIKLLVMSSTSAERNQGRLNPNQE
FT RMLFPQVQEYERVLTLLDEVTALTGKFVVRERNIVKSRVELFQEPVDLRCKAENLIAEM
FT WFGLKRTKLGPRLLKEEWDKLRASFSWLSTDHKETLDVGPFLSHVQFRNFIAHVDAKSR
FT SVRLLGAPVKKSGGVTTVSQVVKSNFFPGFILDSSESLDDQERVEGVSILKHILFMTLN
FT GPYTDEQKKAMVLETFQYFALPHAAEVVKRSRSLTLCLMKNFIEQRGGSILDQIEKAQS
FT GTVGGFSKPQKPYRKQSGGIGYKGKGVWSGIMENTNVQILIDGDGSSNWIEEIRLSSES
FT RLFDVIESVRRLCDDINVNNRVTSSFRGHCMVRLSNFKVKPASRVEGCPVRLMPSSFRI
FT KELQNPDEVFLRVRGDILNLSILLQEDRVMNLLSYRARDTDISESAASYLWMNRTDFSF
FT GKKEPSCSWMCLKTLDSWAWNQAARVLERNIKTPGIDNTAMGNIFKDCLESSLRKQGLL
FT RSRIAEMVERHVIPLTSQELVDILEEDVDFSEMMQSDIMEGDLDIDILMEGSPMLWAAE
FT VEEMGEAMVILSQSGKYYHLKLMDQAATTLSTILGKDGCRLLLGRPTGRSNLREQVKPY
FT LTLLQIREGDVNWVSEYKDDTRGLDEDSAEMWG"
XX
SQ Sequence 6368 BP; 1932 A; 1261 C; 1613 G; 1562 T; 0 other;
jx005846 Length: 6368 03-SEP-2012 Type: N Check: 9142 ..
1 acacaaagac gtccagatga atttagaagc tctttgctct agagtgcttt
51 cagagagagg gctatcaact ggtgagcctg gggtatatga ccagattttt
101 gaaaggcctg gcctcccaaa ccttgaagtc acagtggact ccactggggt
151 agttgtcgat gttggggcca ttcctgactc agcatcacag ctagggtcct
201 cgataaatgc aggcgtgctc accatacctc tctcagaagc atataagata
251 aatcatgact tcactttctc tggactgact aagacaacag ataggaagtt
301 gtctgaagta ttccctttgg ttcatgatgg ctcagactca atgacccccg
351 atgtgatcca cacaagacta gatggaacag tagttgtaat tgaattcaca
401 acaaccagaa gcacaaacat gggaggactt gaggctgcct atcggagcaa
451 gcttgaaaaa taccgtgacc cactaaacag aagaacagac ataatgcctg
501 atgcatcaat ttactttgga atcattgttg ttagtgcatc tggtgttctc
551 acaaatatgc ctctgaccca agatgaagct gaagaattga tgttcaggtt
601 ctgtgtggca aatgagattt attcccaggc aagagcaatg gatgctgagg
651 ttgaacttca aaagtcagag gaggaatatg aggccatatc cagagcaaga
701 gctttcttca cgctttttga ctatgacgat ggtaagctct ctgaggcatt
751 ccctaactct gacattgaga tgctcagaag atttctgagt cagcctgtag
801 acacaagttt tgtgaccaca accctcaaag aaaaagagca agaggcttat
851 aagagaatgt gtgaggagca ctatctaaag agtggcatga gcacaaaaga
901 gaggcttgag gcgaatcgca gtgatgcaat agacaaaact agagctctca
951 tggagagact ccacaacatg agcagcaagg agctacactc gaataagagc
1001 acagtgaagt tgcctccctg ggtagtgaag ccttctgata ggacgttaga
1051 tgtcaaaacg gacacgggat caggggagct actcaaccat ggcccatatg
1101 gggagttgtg gtcaagatgc ttcctggaga ttgtccttgg gaatgtggag
1151 ggggtcatca gcagccctga aaaggagctg gagatcgcca tcagtgatga
1201 ccctgaggct gacaccccta aggctgcaaa gattaaatac cataggttcc
1251 ggcctgagct cagtttagag agcaagcatg aattttcatt acaaggcatc
1301 gagggcaaaa gatggaagca ttcagctagg aatgtcctta aagatgaaat
1351 gtcccacaag acaatgagcc catttgttga tgtctcgaac attgaggagt
1401 ttctgattat gaacaacctg ttaaatgaca catcttttaa tcgggaagga
1451 ctgcaagaaa caatcaacct gttgttggag aaggctactg aaatgcacca
1501 aaatggctta tcaacagctt tgaatgattc cttcaagaga aacttcaaca
1551 caaacgttgt gcagtggagc atgtgggtct catgcttagc tcaggaattg
1601 gcaagtgctt tgaagcaaca ttgcaagcct ggtgagttta tcatcaaaaa
1651 attaatgcac tggccaatat tcgtcataat taagcccact aagtcatcaa
1701 gtcacatatt ctacagcttg gcaataaaaa aagccaacat taagaggagg
1751 ctgattggtg atgtattcac agacacaatt gatgcggggg agtgggagtt
1801 ttcagaattc aaaagcctca agacgtgcaa gctgacaaat ctcattaacc
1851 tgccgtgcac catgctcaac tcaatagcgt tctggagaga gaagatggga
1901 gtagccccct ggatttctag aaaggcctgc tcagagctca gggaacaagt
1951 ggcaatcact ttccttatga gtctggaaga caaatcaaca acagaagagc
2001 ttgttactct cacgaggtat tcacaaatgg agggatttgt gtctccaccc
2051 ctgctcccta aaccccagaa gatggtggaa aagttagaag ttcctttgcg
2101 aacaaagctt caagtgtttt tgtttaggag gcatcttgat gctattgtta
2151 gagttgctgc atccccattc cccattgtgg caagagatgg tcgagtggaa
2201 tggacaggga cattcaatgc aatcactggc cgaagcactg ggctggaaaa
2251 catggtaaac aactggtata ttggctacta taaaaacaaa gaagagtcga
2301 ccgagctaaa tgccttgggc gagatgtaca agaagattgt tgagattgag
2351 gctgagaagc caacatcttc tgagtaccta ggatggggag acactagcag
2401 ccctaagagg catgagttca gtagaagctt cctcaagtca gcatgcatat
2451 ctcttgagaa ggagatagag atgaggcatg gaaagagctg gaagcaaagc
2501 ttggaggaga gagtccttaa agagctgggc tcaaagaact tgctggactt
2551 agcaacaatg aaggcaacaa gcaactttag caaggaatgg gaagctttct
2601 cagaagtcag aacaaaagaa taccataggt ccaaactcct agaaaagatg
2651 gctgaactaa tagagcatgg gttaatgtgg tatgttgatg ctgcaggtca
2701 tgcatggaag gctgtccttg atgacaagtg tatgagaata tgcttgttta
2751 agaaaaatca gcatggaggc ctgagggaaa tttatgtaac gaatgcaaat
2801 gcaaggcttg ttcaatttgg agtagagaca atggcacggt gtgtgtgtga
2851 gctaagccca catgaaacaa tagctaaccc tagactcaag tcaagcatca
2901 tagagaatca tggtctcaag agtgctcgac aattagggca ggggaccatt
2951 aatgtcaact cttcaaatga cgcaaaaaaa tggagtcagg gccattatac
3001 aaccaaattg gctatggtat tatgctggtt catgccagct aagttccata
3051 ggttcatatg ggcaggcatc tcaatgttta ggtgcaagaa gatgatgatg
3101 gacctcaggt ttttagaaaa attgagcaca aaggctaatc agaaaactga
3151 tgatgacttc aggaaagact tagctggggc cttccatggc aatgttgagg
3201 ttccttggat gactcaagga gctacatatc tccagactga gacagggatg
3251 atgcaaggga tcctgcattt tacatcaagc ctactgcatt catgcgtcca
3301 aagtttttac aaggcatatt ttttatctcg gcttaaagaa gggatcgcag
3351 gcagaaccat caaggcagct atagatgttt tagaaggctc tgatgactca
3401 gctatcatga taagcttgaa gccagcctca gacaatgagg aagcgatggc
3451 tcggttttta acagccaact tgctatactc agtcagagtc ataaacccgc
3501 tctttggcat ttatagctct gagaagtcaa cagtaaatac cttattttgt
3551 gtggaataca actcagagtt ccacttccac aagcatttag tcaggcctac
3601 aatcagatgg gttgcagcat cccaccaaat ctctgagtca gaagccctgg
3651 caagcaggca ggaagattat gcgaaccttc tcactcaatg tcttgaaggg
3701 ggttcatcat tctctctaac atatttgatc cagtgtgccc agctcgtcca
3751 tcattatatg ctgctcgggc tctgcttgca cccgctgttt gggacatttg
3801 tagggatgct gattgaggat ccagatccag ccctaggctt cttcataatg
3851 gacaatccag cttttgcagg gggagctgga tttagattca acctttggag
3901 atcttgcaag ttcacaaacc ttggcaaaaa gtatgcattc tttttcaatg
3951 agattcaagg aaaaaccaag ggggatgcag attacagagc actggatgca
4001 acaactggtg gaacattaag ccactctgta atgacctact ggggggacag
4051 gagaaagtac caacatctcc tagacaggat ggggcttccc aaggactggg
4101 ttgagaggat agatgaaaac ccaagcatct tatataggag gcctgagaac
4151 aagcaggaac ttatcttgag gctggcagaa aaagtgcatt ctccaggtgt
4201 cacttccagc ttcagcaaag ggcatgttgt acctagggtg gtggcagctg
4251 gagtctactt gctgtcaaga cattgcttca ggtacactgc atcaatccac
4301 ggtagggggg catctcagaa ggcgagtctg attaagctgc ttgtcatgtc
4351 ttcaacatca gctgagagga atcaaggaag gctgaaccca aatcaagaaa
4401 gaatgctctt tcctcaagtc caagagtatg aaagagtatt gaccttgtta
4451 gatgaggtta ctgcgctcac agggaagttt gttgtgagag aaaggaacat
4501 agtcaaaagc agagtagagc ttttccagga gcctgtggac ttaaggtgca
4551 aagctgaaaa cctcattgca gaaatgtggt ttggacttaa aagaacaaag
4601 ttgggcccaa ggctgctaaa ggaagaatgg gacaaactcc gcgcctcctt
4651 ctcatggtta agcactgatc ataaagaaac actggatgtg ggtccatttc
4701 ttagtcatgt tcaattcagg aatttcattg cacatgtgga tgcgaagtct
4751 aggagtgttc gacttttggg ggcccctgtc aagaagtctg gaggagtgac
4801 tacagtgtcc caggtggtga aatctaattt ctttccaggt ttcattttgg
4851 actccagtga gagcttagat gaccaagaga gggttgaggg ggtgtcaatc
4901 ttaaaacaca ttctatttat gaccttgaat ggcccttaca ctgatgagca
4951 aaagaaagcc atggttctgg agaccttcca atattttgca ctgccacatg
5001 ctgctgaagt tgtgaagaga tcacgatcac taaccctatg cttgatgaag
5051 aattttattg agcagagagg agggtcaata cttgaccaaa ttgaaaaggc
5101 tcagtcaggt acagtgggtg gattcagtaa gccccagaag ccttaccgca
5151 aacagtcagg aggcattggc tacaagggga aaggtgtttg gtcaggcata
5201 atggaaaaca caaatgtaca gatcctgata gatggtgatg gttcatcaaa
5251 ctggatagaa gaaatcaggc tgagtagtga gtccaggcta tttgatgtca
5301 tagaatctgt caggaggctg tgtgatgaca ttaatgtcaa taatagagtt
5351 acatcaagct ttcggggtca ttgcatggtg aggcttagca actttaaggt
5401 caagccagct tcaagggtag aaggttgccc agtgcgactc atgccctctt
5451 cattccggat aaaggagctc caaaacccag atgaggtctt cttaagggtg
5501 aggggagaca ttctaaacct gtccatcctc cttcaagagg accgagtcat
5551 gaatctgctt agctacagag ctcgtgacac tgacatctca gagtctgcag
5601 catcctacct atggatgaat agaacagact tctcatttgg aaagaaggag
5651 ccatcttgca gctggatgtg cttgaaaaca ttggactcat gggcttggaa
5701 tcaagcagca agagttcttg aaagaaacat caaaacccct ggaattgata
5751 acaccgccat ggggaacatt ttcaaggatt gcttagaaag ctcactcaga
5801 aagcaggggt tgcttagatc tagaattgct gagatggtgg aacgtcatgt
5851 tatcccacta acaagtcagg agctggtgga tatcctggag gaagatgtcg
5901 acttttcaga aatgatgcaa tctgatataa tggaagggga cctagacatt
5951 gatatcctga tggaagggtc accaatgctc tgggcagcag aagtggagga
6001 gatgggagaa gctatggtga tactcagtca gtcaggaaag tattatcatc
6051 taaaattaat ggatcaagca gcaacaaccc tttcaacaat ccttgggaaa
6101 gatggttgca ggcttctact ggggagacct actgggagat caaatctcag
6151 ggagcaggtg aagccctact tgacattatt gcaaataaga gagggagatg
6201 tcaactgggt ttctgagtac aaagatgaca cacgtggtct tgatgaagac
6251 tctgcagaaa tgtggggtta aaccaaccag gactggggct cgggttgagg
6301 tgaagtgact ctgctgtctc acttgagcta tcagtaccta aaggttgata
6351 tctggacggt ctttgtgt