Sequence of DPV Zucchini yellow mosaic virus

Zucchini yellow mosaic virus isolate HBCF-74 polyprotein gene, partial cds.

ACC No: JX028592

Dated: 2013-02-15 | Length: 889 | CRC: -1317447102

                
ID   JX028592; SV 1; linear; genomic RNA; STD; VRL; 889 BP.
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AC   JX028592;
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DT   15-FEB-2013 (Rel. 115, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE   Zucchini yellow mosaic virus isolate HBCF-74 polyprotein gene, partial cds.
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KW   .
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OS   Zucchini yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-889
RA   Salvaudon L., De Moraes C.M., Mescher M.C.;
RT   "Outcomes of co-infection by two potyviruses: implications for the
RT   evolution of manipulative strategies";
RL   Proc. Biol. Sci. 280:1756-1756(2013).
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RN   [2]
RP   1-889
RA   Salvaudon L., De Moraes C.M., Mescher M.C.;
RT   ;
RL   Submitted (08-MAY-2012) to the INSDC.
RL   Laboratoire Ecologie Systematique et Evolution, Universite Paris-Sud 11, 15
RL   avenue Georges Clemenceau, Orsay 91400, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .889
FT                   /organism="Zucchini yellow mosaic virus"
FT                   /host="Cucurbita foetidissima"
FT                   /isolate="HBCF-74"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="Jun-2009"
FT                   /PCR_primers="fwd_name: ZYCP1-F, fwd_seq:
FT                   aagtgaattggcacgcta, rev_name: ZYCP1-R, rev_seq:
FT                   cggtaaatattagaattacgtcg"
FT                   /db_xref="taxon:12232"
FT   CDS             <1. .870
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AFO53511.1"
FT                   /translation="FEQGDTVMLQSDTQPTVADAGATKKDKEDDKGKNKDVTGSGSGEK
FT                   TVAAVTKDKDVNAGSHGKIVPRLSKITKKMSLPRVKGNVILDIDHLLEYKPDQIELYNT
FT                   RASHQQFASWFNQVKTEYDLNEQQMGVVMNGFMVWCIENGTSPDINGVWVMMDGNEQVE
FT                   YPLKPIVENAKPTLRQLMHHFSDAAEAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFD
FT                   FYEVNSKTPERAREAVAQMKAAALSNVSSRLFGLDGNVATTSEDTERHTARDVNRNMHT
FT                   LLGVNTMQ"
FT   mat_peptide     <1. .30
FT                   /product="nuclear inclusion b"
FT   mat_peptide     31. .867
FT                   /product="coat protein"
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SQ   Sequence 889 BP; 286 A; 169 C; 223 G; 211 T; 0 other;

jx028592 Length: 889  15-FEB-2013  Type: N  Check: 3606  ..

       1  tttgaacaag gagacactgt gatgctccaa tcagacactc agccaactgt
      51  ggcagatgct ggagctacaa agaaagacaa agaagatgac aaagggaaaa
     101  acaaggacgt tacaggctcc ggctcaggtg agaaaacagt agcagctgtc
     151  acgaaggaca aggatgtgaa tgctggttct catgggaaaa ttgtgccgcg
     201  tctttcgaag atcacaaaga aaatgtcatt gccacgcgtg aaaggaaatg
     251  tgatactcga tattgatcat ttgctggaat ataaaccgga tcaaattgag
     301  ttatataaca cacgagcgtc tcatcagcag ttcgcctctt ggttcaacca
     351  ggttaagacg gaatatgatt tgaacgagca acagatggga gttgtaatga
     401  atggtttcat ggtttggtgc attgaaaatg gcacttcacc cgacattaat
     451  ggagtgtggg ttatgatgga cggaaatgag caagttgagt atcccttaaa
     501  accaatagtt gaaaatgcaa agccaacgct gcggcaatta atgcatcatt
     551  tttcagatgc agcggaggca tatatagaga tgagaaatgc agaggcacca
     601  tacatgccga ggtatggttt gcttcgaaac ctacgggata ggagtttagc
     651  acgatatgct ttcgatttct atgaagtcaa ttctaaaact cctgaaagag
     701  cccgcgaagc tgttgcacag atgaaagcag cagctcttag caatgtttct
     751  tcaaggttgt ttggccttga tggaaatgtt gccaccacta gcgaagacac
     801  tgaacggcac actgcacgtg atgttaatag aaacatgcac accttactag
     851  gtgtgaatac aatgcagtaa agggtaggcc gcctaccta