Sequence of DPV Zucchini yellow mosaic virus

Zucchini yellow mosaic virus isolate RSHS polyprotein gene, partial cds.

ACC No: JX028593

Dated: 2013-02-15 | Length: 883 | CRC: 1235878205

                
ID   JX028593; SV 1; linear; genomic RNA; STD; VRL; 883 BP.
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AC   JX028593;
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DT   15-FEB-2013 (Rel. 115, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE   Zucchini yellow mosaic virus isolate RSHS polyprotein gene, partial cds.
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KW   .
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OS   Zucchini yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-883
RA   Salvaudon L., De Moraes C.M., Mescher M.C.;
RT   "Outcomes of co-infection by two potyviruses: implications for the
RT   evolution of manipulative strategies";
RL   Proc. Biol. Sci. 280:1756-1756(2013).
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RN   [2]
RP   1-883
RA   Salvaudon L., De Moraes C.M., Mescher M.C.;
RT   ;
RL   Submitted (08-MAY-2012) to the INSDC.
RL   Laboratoire Ecologie Systematique et Evolution, Universite Paris-Sud 11, 15
RL   avenue Georges Clemenceau, Orsay 91400, France
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FH   Key             Location/Qualifiers
FH
FT   source          1. .883
FT                   /organism="Zucchini yellow mosaic virus"
FT                   /host="Cucurbita pepo var. texana"
FT                   /isolate="RSHS"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="Sep-2007"
FT                   /PCR_primers="fwd_name: ZYCP1-F, fwd_seq:
FT                   aagtgaattggcacgcta, rev_name: ZYCP1-R, rev_seq:
FT                   cggtaaatattagaattacgtcg"
FT                   /db_xref="taxon:12232"
FT   CDS             <1. .870
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AFO53512.1"
FT                   /translation="FEQGDTVMLQSGTQPTVSDAGATKKDKEDDKGKNKDVTGSGSGER
FT                   TVAAVTKDKDVNAGSHGKIVPRLSKITKKMSLPRVKGNVILDIDHLLEYKPDQIELYNT
FT                   RASHQQFASWFNQVKTEYDLNEQQMGVVMNGFMVWCIENGTSPDINGVWVMMDGNEQVE
FT                   YPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFD
FT                   FYEVNSKTPERAREAVAQMKAAALSNVSSRLFGLDGNVATTSEDTERHTARDVNRNMHT
FT                   LLGVNTMQ"
FT   mat_peptide     <1. .30
FT                   /product="nuclear inclusion b"
FT   mat_peptide     31. .867
FT                   /product="coat protein"
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SQ   Sequence 883 BP; 281 A; 168 C; 226 G; 208 T; 0 other;

jx028593 Length: 883  15-FEB-2013  Type: N  Check: 437  ..

       1  tttgaacaag gagacactgt gatgctccaa tcaggcactc agccaactgt
      51  gtcagatgct ggagctacaa agaaagacaa agaagatgac aaagggaaaa
     101  acaaggacgt tacaggctcc ggctcaggcg agagaacagt agcagctgtc
     151  acgaaggaca aggatgtgaa tgctggttct catgggaaaa ttgtgccgcg
     201  tctttcgaag atcacaaaga aaatgtcatt gccacgcgtg aaaggaaatg
     251  tgatactcga tattgatcat ttgctggaat ataaaccgga tcaaattgag
     301  ttatataaca cacgagcgtc tcatcagcag ttcgcctctt ggttcaacca
     351  ggttaagacg gaatatgatt tgaacgagca acagatggga gttgtaatga
     401  atggtttcat ggtttggtgt attgaaaatg gcacttcacc cgacattaat
     451  ggagtgtggg ttatgatgga cggaaatgag caagttgagt atcccttgaa
     501  accaatagtt gaaaatgcaa agccaacgct gcggcaaata atgcatcatt
     551  tttcagatgc agcggaggca tatatagaga tgagaaatgc agaggcacca
     601  tacatgccga ggtatggttt gcttcgaaac ctacgggata ggagtttagc
     651  acgatatgct ttcgatttct atgaagtcaa ttctaaaact cctgaaagag
     701  cccgcgaagc tgttgcgcag atgaaagcag cagctcttag caatgtttct
     751  tcaaggttgt ttggccttga tggaaatgtc gccaccacta gcgaagacac
     801  tgaacggcac actgcacgtg atgttaatag aaacatgcac accttactag
     851  gtgtgaatac aatgcagtaa agggtaggcc gcc