Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus isolate SDJNiR4 P8 gene, complete cds.

ACC No: JX047223

Dated: 2013-05-31 | Length: 1936 | CRC: 635682042

                
ID   JX047223; SV 1; linear; genomic RNA; STD; VRL; 1936 BP.
XX
AC   JX047223;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate SDJNiR4 P8 gene, complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   Fijivirus group 2.
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RN   [1]
RP   1-1936
RA   Yin X., Li X.D.;
RT   "Genetic diversity and population structure of Rice black-streaked dwarf
RT   virus in China";
RL   Unpublished.
XX
RN   [2]
RP   1-1936
RA   Yin X., Li X.D.;
RT   ;
RL   Submitted (10-MAY-2012) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, 61 Daizong
RL   Street, Tai'an, Shandong 271018, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1936
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="8"
FT                   /host="Oryza sativa"
FT                   /isolate="SDJNiR4"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:10990"
FT   CDS             25. .1800
FT                   /codon_start=1
FT                   /product="P8"
FT                   /note="minor core protein"
FT                   /protein_id="AGE44070.1"
FT                   /translation="MTGTHDDRISLRLVFFNLWNKKRPNDPINHRKTKKKLKPQTANPT
FT                   SNPILVSPSITEYAEQISDEFAKARKPILVPTQIFSAFTRLETIFNRTGSYPDLFSNPI
FT                   KYLGFLIFMPDVSMHLDSPTVDHSYYNLKRNHKMSFDELQSNLTSRMLTGQIVKTETND
FT                   LAERFETYYFDPRCERTSIGFLKRAAIVRFEFLSYKYNNDLTLSEREKLPVWASHLIAR
FT                   MNVENVSLPLEISCSAINPTQHFAVIVLKNAKTNVTRGRFWTVLDDERDFLSVKTDIQA
FT                   IEFERNSVTTAGNLRHVLNNCLTLGEPFAFDPLDYSFKLNLLETGLSPLDDVVTIRLRD
FT                   LLRVFKEGQDVQIIGNKGVGKSEIGAMLAERYPHLLVVDSDDYGRFLVMLLNLVPSLFK
FT                   NFDFEINEELLTEEIYFQAMSDFIKAKQTEGVSLQTIFEYVMEGILLPNTIESGEANEE
FT                   VILDIFNRVFHSIQGSKFIGYRKFMIEYTRLMYTNFNKSQTCHFVHSYCELSFVPHSLA
FT                   YITLYSSYNSAVLNVVPRNGQVECSPSKMMANTLLHHFYERYTSNMNPTPVFLFSYFFG
FT                   LTKGLNVLKASSIIV"
XX
SQ   Sequence 1936 BP; 603 A; 335 C; 334 G; 664 T; 0 other;

jx047223 Length: 1936  31-MAY-2013  Type: N  Check: 5277  ..

       1  aagttttttt cgcactgtct aaagatgact ggcacccatg acgaccggat
      51  ttctttaaga cttgtattct tcaacttatg gaacaaaaaa cgaccaaacg
     101  acccaattaa ccaccgaaaa acgaagaaaa agctaaaacc tcaaacagca
     151  aatcctacat caaaccccat tttggtatcc ccttcaatta ctgagtatgc
     201  tgaacagata tcagacgaat ttgctaaggc tcgaaaaccg attttagtcc
     251  cgactcaaat attttccgct ttcactagac ttgaaacgat tttcaacaga
     301  acaggctctt accctgattt gttcagtaat ccaatcaaat acctcggatt
     351  tttaatcttc atgcccgatg tttcaatgca tttagattct cccactgttg
     401  atcattcata ttataatttg aagagaaatc ataaaatgag ttttgatgaa
     451  cttcaatcaa atttaacttc ccgaatgtta actggccaaa ttgtgaagac
     501  tgagactaat gatcttgcgg aacgttttga aacttattac tttgacccta
     551  gatgtgaaag aacaagcatt ggatttttga aaagagccgc gattgtaaga
     601  tttgaattct tatcttataa atacaacaat gatttaacac tgtcagaacg
     651  tgaaaaatta cctgtttggg cttctcattt aatagctcgt atgaacgttg
     701  aaaatgtttc tttaccattg gaaattagtt gtagtgcaat caatcccacc
     751  caacattttg ctgttatagt tcttaaaaac gctaaaacca atgtgacaag
     801  aggcagattc tggaccgtgt tggacgatga acgtgacttt ttatctgtta
     851  aaaccgatat tcaagcgatt gaatttgaac gtaattctgt aaccactgct
     901  ggcaatttaa gacatgtttt aaacaattgt ttaacattag gcgaaccctt
     951  cgccttcgac ccacttgatt attcttttaa acttaactta cttgaaacag
    1001  ggttatctcc attagatgac gttgtgacca ttagattgag agatttgttg
    1051  cgtgtgttca aagaaggaca ggatgttcaa attattggta ataaaggagt
    1101  aggtaagtct gaaattggcg caatgctagc agaacgatat cctcatcttt
    1151  tagttgttga tagtgatgat tatggcaggt ttttggtaat gttgcttaat
    1201  ttagttcctt cactgtttaa aaattttgat tttgaaatta acgaagaact
    1251  tttaacagaa gaaatttatt ttcaagctat gtctgatttt attaaagcta
    1301  aacaaactga aggtgtttca cttcaaacga tttttgagta tgtaatggaa
    1351  ggaatccttc ttccaaacac tattgagagt ggagaagcta atgaggaagt
    1401  tattttagac atttttaatc gtgtttttca tagcatccaa ggttctaaat
    1451  ttattggata tcgtaagttc atgattgaat atacgcgtct gatgtacact
    1501  aattttaaca agagtcaaac ttgtcatttc gttcactctt attgtgaatt
    1551  atcgttcgtt cctcattctt tggcttatat tactttatac agtagttaca
    1601  actcagctgt gttaaatgtt gttcctagaa acggacaagt agaatgcagt
    1651  ccttcaaaga tgatggccaa tacgctactt catcattttt acgaaagata
    1701  tacctctaat atgaatccaa ccccagtatt tttgttttct tatttctttg
    1751  gtttaaccaa aggtttaaat gttctaaaag cttcatctat tattgtgtaa
    1801  cattactatg cttttgtgaa gaatatcatg tccttttagg gttcgattcg
    1851  tataaaggtg tttcagtcca atatcttgat ggcagactag gtcgatgttt
    1901  gattctagtg aagtgtgcga aaattcagct attgtc