Sequence of DPV Rice black streaked dwarf virus

Rice black streaked dwarf virus isolate SDYT1 P8 gene, complete cds.

ACC No: JX047247

Dated: 2013-05-31 | Length: 1936 | CRC: 191266852

                
ID   JX047247; SV 1; linear; genomic RNA; STD; VRL; 1936 BP.
XX
AC   JX047247;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Rice black streaked dwarf virus isolate SDYT1 P8 gene, complete cds.
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KW   .
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OS   Rice black streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   Fijivirus group 2.
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RN   [1]
RP   1-1936
RA   Yin X., Li X.D.;
RT   "Genetic diversity and population structure of Rice black-streaked dwarf
RT   virus in China";
RL   Unpublished.
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RN   [2]
RP   1-1936
RA   Yin X., Li X.D.;
RT   ;
RL   Submitted (10-MAY-2012) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, 61 Daizong
RL   Street, Tai'an, Shandong 271018, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1936
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="8"
FT                   /host="Zea mays"
FT                   /isolate="SDYT1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:10990"
FT   CDS             25. .1800
FT                   /codon_start=1
FT                   /product="P8"
FT                   /note="minor core protein"
FT                   /protein_id="AGE44094.1"
FT                   /translation="MTGTHDDRISLRLLFFNLWNKKRPNDPINHRKTKKKLKPQTANPT
FT                   SNPILVSPSITEYAEQISDEFAKARKPILVPTQIFSAFTRLETIFNRTGSYPDLFSNPI
FT                   KYLGFLIFMPDVSMHLDSPTVDHSYYNLKRNHKMSFDKLQSNLTSRMLTGQIVKTETND
FT                   LAERFETYYFDPRCERTSIGFLKRTAIVRFEFLSYKYNNDLTLSEREKLPVWASHLIAR
FT                   MNVENVSLPLEISCSAINPTQHFAVIVLKNAKTNVTRDRFWTVLDDERDFLSVKTDIQA
FT                   IEFERNSVTTAGNLRHVLNNCLTLGEPFAFDPLDYSFKLNLLETGLSPLDDVVTIRLKD
FT                   LLRVFKEGQDVQIIGNKGVGKSEIGAMLAARYPHLLVVDSDDYGRFLVMLLNLVPSLFK
FT                   NYDFEINEELLTEEIYFQAMSDFIKAKQTEDVSLQTIFEYVMEGIILPNTIESGEANEE
FT                   VILDIFNRVFHSIQGSKFIGYRKFMIEYTRLMYTNFNKSQTCHFVHSYCELSFVPHSLA
FT                   YITLYSSYNSAVLNVVPRNGQVECSSSKMMANTLLHHFYERYTSNMNPTPVFLFSYFFG
FT                   LTKGLNVLKASSIIV"
XX
SQ   Sequence 1936 BP; 604 A; 343 C; 333 G; 656 T; 0 other;

jx047247 Length: 1936  31-MAY-2013  Type: N  Check: 3  ..

       1  aagttttttt cgcactgtct aaagatgact ggcacccatg acgaccggat
      51  ttctttaaga cttttattct tcaacttatg gaacaaaaaa cgaccaaacg
     101  acccaatcaa ccaccgaaaa acgaagaaaa agctaaaacc tcaaacagca
     151  aatcctacat caaaccccat tttggtatcc ccttcaatta ctgagtatgc
     201  tgaacaaata tcagacgaat ttgctaaggc tcgaaaacca attttagtcc
     251  cgactcaaat attttccgct ttcactagac ttgaaacgat tttcaacaga
     301  acaggctctt accctgattt gttcagtaat ccaatcaaat acctcggatt
     351  tttaattttc atgcctgatg tttcaatgca tttagattct cccactgttg
     401  atcattcata ttataatttg aagagaaacc ataaaatgag ttttgataaa
     451  cttcaatcaa atttaacttc ccgaatgtta actggccaaa ttgtgaaaac
     501  tgagaccaat gaccttgcgg aacgttttga aacttattac tttgacccta
     551  gatgtgaaag aacaagtatc ggatttttga aaagaaccgc gattgttaga
     601  tttgaattct tatcttataa atacaacaat gatttaacgc tgtcagaacg
     651  tgaaaaatta cctgtttggg cttctcattt aatagctcgt atgaacgtgg
     701  agaatgtttc tttaccattg gaaattagtt gtagtgcaat caatcccact
     751  caacatttcg ctgttatagt tcttaaaaat gctaaaacca atgtgacaag
     801  ggacagattc tggaccgtat tggacgatga acgtgacttt ttatctgtta
     851  aaaccgatat tcaggcgatt gaatttgaac gtaattccgt aaccactgct
     901  ggcaatttaa gacatgtttt aaacaattgt ttaacattag gcgaaccttt
     951  cgccttcgac ccacttgact attcttttaa acttaactta cttgaaacag
    1001  ggctgtctcc attagatgac gttgtgacca ttagattgaa agatttgcta
    1051  cgtgtgttca aagaagggca ggatgttcaa attattggta ataaaggagt
    1101  aggtaagtct gaaattggcg caatgttagc agcacgatat cctcatcttt
    1151  tagttgttga tagtgatgat tatggcaggt ttttggtaat gttacttaat
    1201  ttagttccct cattgtttaa aaattatgat tttgaaatta acgaagaact
    1251  tttaaccgaa gaaatttatt ttcaagccat gtctgatttt attaaagcta
    1301  aacaaactga agatgtttcg cttcaaacga tttttgagta tgtaatggaa
    1351  ggaataattc ttcccaacac cattgagagt ggagaagcta atgaggaagt
    1401  tattttagac atttttaatc gtgtttttca tagcatccag ggttctaaat
    1451  ttattggata tcgtaagttc atgattgaat atacgcgtct aatgtacact
    1501  aattttaaca aaagtcaaac ttgtcatttc gtccactcgt attgtgaatt
    1551  gtctttcgtt cctcattcct tggcgtatat cactttatac agtagttaca
    1601  actcagctgt gttaaatgtt gtccctagaa acggacaagt agaatgcagt
    1651  tcttcaaaga tgatggccaa tacgctgctt catcattttt acgaaagata
    1701  tacttctaat atgaatccaa ccccagtatt tttgttttct tatttctttg
    1751  gtttaaccaa aggtttaaac gttctgaaag cttcatctat tattgtgtaa
    1801  cattattatg tttttgtgaa gaatatcatg tccttttagg gttcgactcg
    1851  tataaaggtg tttcagtcca atatcttgat ggcagactag gtcgatgttt
    1901  gattctagtg aagtgtgcga aaattcagct attgtc