Sequence of DPV Turnip mosaic virus

Turnip mosaic virus strain BJ-B02 P3 protein gene, partial cds.

ACC No: JX138350

Dated: 2012-08-22 | Length: 1065 | CRC: -1191445643

                
ID   JX138350; SV 1; linear; genomic RNA; STD; VRL; 1065 BP.
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AC   JX138350;
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DT   22-AUG-2012 (Rel. 113, Created)
DT   22-AUG-2012 (Rel. 113, Last updated, Version 1)
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DE   Turnip mosaic virus strain BJ-B02 P3 protein gene, partial cds.
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KW   .
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OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1065
RA   Ye Y., Zeng G., Yan X., Ma R., Wu C., Yao L.;
RT   "Cloning and Sequence Analysis of P3 Gene of Turnip mosaic virus Isolates
RT   from Brassica and Raphanus";
RL   Jiangxi Nongye Daxue Xuebao 34(2):264-269(2012).
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RN   [2]
RP   1-1065
RA   Yao L., Ye Y., Zeng G., Ma R.;
RT   ;
RL   Submitted (05-JUN-2012) to the INSDC.
RL   Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture
RL   and Forestry Sciences, 9 Shuguang Huayuan Zhonglu, Beijing 100097, P.R.
RL   China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1065
FT                   /organism="Turnip mosaic virus"
FT                   /host="cabbage"
FT                   /strain="BJ-B02"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Beijing"
FT                   /isolation_source="leaves"
FT                   /collection_date="Sep-2010"
FT                   /db_xref="taxon:12230"
FT   CDS             <1. .>1065
FT                   /codon_start=1
FT                   /product="P3 protein"
FT                   /protein_id="AFP97538.1"
FT                   /translation="GTEWEDAHGASNIDDPQWCIKRLIKGVYRPKQLKEDMLANPFLPL
FT                   YALLSPGVILAFYNSGSLEYLMNHYIRVDSNVAVLLVVLKSLAKKVSTSQSVLAQLQII
FT                   DRSLPELVEAKANVNGSDNAASRACNRFMGMLLHMSEPNSELADGGYTILRDHSISILE
FT                   KSYLQILDEAWNELSWSERCAIRYYSSKQAIFTQKDLPMKSEVDLGGRYSVSVMSSYER
FT                   SKQCMTSVYSSIGSRLRSSISWTSSKVSNSVCRTINYLVPDVFKFINVFVCISLLITIA
FT                   AEANRIVTTQRRLKLDIEETERRKIEWELAFHHAIMTQSAGQHPTIDEFRAYIADKAPH
FT                   LSEHIEPEEKVVAHQ"
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SQ   Sequence 1065 BP; 335 A; 211 C; 254 G; 265 T; 0 other;

jx138350 Length: 1065  22-AUG-2012  Type: N  Check: 1058  ..

       1  ggcacagagt gggaggacgc tcatggagcc agcaacatag atgatccaca
      51  gtggtgcatc aagaggctca taaaaggagt ttacagacca aagcaattga
     101  aagaagacat gttggcgaac cctttcttac cactatatgc cctattgtca
     151  ccaggtgtta tcctagcatt ttacaatagt ggctctctag agtacttgat
     201  gaaccattac atcagggtag acagcaatgt cgccgttttg ttggttgttt
     251  tgaaatctct agcgaagaag gtgtcaacta gccagagcgt actagcccag
     301  cttcaaatta ttgaccgaag tctaccagaa ctcgtcgaag caaaggctaa
     351  tgttaatggg tcagataatg cagcctctcg cgcgtgtaac agatttatgg
     401  gcatgctttt gcacatgtca gaaccaaatt cggagcttgc ggatggtgga
     451  tacacaattt tgcgagatca tagcatctcc attttagaaa aaagttatct
     501  acaaatcttg gacgaagcat ggaacgagtt aagttggtcg gagcgctgtg
     551  ctataagata ctactcgtca aagcaagcaa tctttacaca gaaagatttg
     601  ccaatgaaaa gcgaagtcga tttaggcggc agatacagcg tgtcagtcat
     651  gtcatcttac gaacggagta agcaatgtat gacaagcgta tactctagta
     701  taggtagtag attacgtagt agtatatcat ggactagtag caaggtatcg
     751  aatagtgtgt gtaggaccat taactattta gtaccggatg tattcaagtt
     801  tattaatgta tttgtgtgta tcagcttatt aatcacgata gctgccgagg
     851  cgaatcgcat cgtcaccacg caaagaaggc tcaagctgga tatcgaggag
     901  acagagcgca ggaagataga atgggagctt gcattccacc atgccattat
     951  gacacaaagt gcaggccaac acccaacgat agatgagttc agagcataca
    1001  tcgctgacaa agcaccacat ctaagtgagc atatcgagcc tgaagaaaag
    1051  gtagtagctc atcaa