Sequence of DPV Chickpea chlorotic dwarf virus
Chickpea chlorotic dwarf virus isolate D14, complete genome.
ACC No: JX183065
Dated: 2012-07-29 | Length: 2583 | CRC: 1913572114
ID JX183065; SV 1; circular; genomic DNA; STD; VRL; 2583 BP.
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AC JX183065;
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DT 29-JUL-2012 (Rel. 113, Created)
DT 29-JUL-2012 (Rel. 113, Last updated, Version 1)
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DE Chickpea chlorotic dwarf virus isolate D14, complete genome.
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KW .
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OS Chickpea chlorotic dwarf virus
OC Viruses; ssDNA viruses; Geminiviridae; Mastrevirus;
OC unclassified Mastrevirus.
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RN [1]
RP 1-2583
RA Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.;
RT "Characterization of viruses associated with chickpea chlorotic stunt
RT disease in India";
RL Unpublished.
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RN [2]
RP 1-2583
RA Surapathrudu K., Akshay S., Verma H.N., Malathi V.G.;
RT ;
RL Submitted (14-JUN-2012) to the INSDC.
RL Division of Plant Pathology, Indian Agricultural Research Institute, Pusa,
RL New Delhi, Delhi 110012, India
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FH Key Location/Qualifiers
FH
FT source 1. .2583
FT /organism="Chickpea chlorotic dwarf virus"
FT /host="Cicer arietinum"
FT /isolate="D14"
FT /mol_type="genomic DNA"
FT /country="India:New Delhi"
FT /isolation_source="leaf"
FT /collected_by="VG Malathi"
FT /collection_date="Jan-2011"
FT /identified_by="Surapathrudu K"
FT /db_xref="taxon:463360"
FT CDS 132. .410
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF V2"
FT /protein_id="AFO38349.1"
FT /translation="MERILYQVFPTDTNYSYDPPPVNTNSQGSSQTDFGKVVIALVVIL
FT VSVGVFYLAYSLFLKDCILLFKAKKQRTTTEIVFGQTPARNQDHPQP"
FT CDS 423. .1160
FT /codon_start=1
FT /product="capsid protein"
FT /note="ORF V1"
FT /protein_id="AFO38350.1"
FT /translation="MSTVTWGNKRKRSDRSSKAKSKSSGSYVPRSVSSRRESLQVATFS
FT WTSSGSGIKFSTGGAAYLVSNFPQGANDNCRHTNKTVLYKFMAKNTVYLDPSHYPKVFK
FT CPFTFWLVYDKAPGASVPSTGDIFEGPSLFPANPWTWTVSRAACHRFVVKKTWSVVVES
FT NGVDPGKAQSSSYYGPGPCNQIKSCNKFFKRLGVSTEWKNSSTGDVGDIKEGALYIVGA
FT PSQKSDVYVNGYFRVYFKSVGNQ"
FT gene complement(1318. .2406)
FT /gene="C1:C2"
FT CDS complement(join(1319. .1732,1819. .2406))
FT /codon_start=1
FT /gene="C1:C2"
FT /product="replication associated protein"
FT /protein_id="AFO38351.1"
FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL
FT GVAIELHQDGTTHCHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD
FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIMEEFPHEWATKLWLEYSANKL
FT FPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQEPRRTGARVPSLYICGPTRTGKTTWA
FT RSLGRHNYWNGTIDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKK
FT IKGGVPSIILTNRDEDWIPAMSEHQKEYFTDNCEIHYMDDGVTFFARESSSH"
FT CDS complement(1319. .1753)
FT /codon_start=1
FT /gene="C1:C2"
FT /product="Rep B"
FT /note="ORF C2"
FT /protein_id="AFO38353.1"
FT /translation="MDGRSNQEPRRTGARVPSLYICGPTRTGKTTWARSLGRHNYWNGT
FT IDFTTYDEHATYNVIDDIPFKFVPLWKQLIGCQFDFTVNPKYGKKKKIKGGVPSIILTN
FT RDEDWIPAMSEHQKEYFTDNCEIHYMDDGVTFFARESSSH"
FT CDS complement(1531. .2406)
FT /codon_start=1
FT /gene="C1:C2"
FT /product="Rep A"
FT /note="ORF C1"
FT /protein_id="AFO38352.1"
FT /translation="MPSANKNFRFQSKYVFLTYPKCSSQRDDLFEFLWEKLTPFLIFFL
FT GVAIELHQDGTTHCHALIQLDKKPWIRDPSFFDFEGNHPNIQPARNSKQVLEYISKDGD
FT IKTRGDFRDHKVSPRKSDARWRTIIQTATSKEEYLDMIMEEFPHEWATKLWLEYSANKL
FT FPPQPEAYVSPFTESDLRCHEDLAQWRDTHLYQVSIDAYTLVHPVSYQQAQSYLEWMAD
FT LTRNREGLELESPASTSADQLVPERPPGLEASDDTTTGMGPSTSPRTTNTRPTMSLTTS
FT PSSSSHCGSN"
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SQ Sequence 2583 BP; 672 A; 519 C; 648 G; 744 T; 0 other;
jx183065 Length: 2583 29-JUL-2012 Type: N Check: 4736 ..
1 accggcgtgg cccaccttat cgcgagcact ttagtgcgag cggttcagat
51 ttaaagtgga aaagttcccg cccactaggg tttgctttag cttttgcttt
101 ataaaaggcg cactaatggg tagaccgtag aatggaacgt attctgtatc
151 aggtatttcc tacggatacg aattattcgt acgatcctcc tcctgtgaat
201 acgaattccc agggatcctc tcaaacggat ttcgggaagg tggttatcgc
251 cttggtggtt attctggtta gtgttggtgt gttctatctg gcgtatagtc
301 tgttcttgaa ggattgtatc cttctgttca aggcgaagaa gcagaggacc
351 accactgaaa tcgtgtttgg tcaaaccccg gctagaaatc aggatcatcc
401 tcaaccttag gcggggtgca tcatgtcaac tgtgacgtgg ggaaacaaga
451 ggaagcgcag cgataggtcc tcgaaggcga agagtaagtc ctctgggtct
501 tatgtgccca gatctgtgtc ctccaggagg gaatcgttgc aggtggctac
551 cttttcctgg accagttctg gttcgggtat caagttctct actggtggtg
601 ctgcctacct tgtgagcaat tttccacagg gtgccaacga taactgtcgt
651 cacaccaaca agaccgtgct atacaaattc atggccaaga atacggtgta
701 cttggaccct agtcattatc ctaaggtctt taagtgcccg ttcacttttt
751 ggctggtgta cgacaaggct cctggtgcaa gtgtccctag tactggggac
801 atatttgaag gtccctctct attccctgct aatccctgga cgtggactgt
851 gtctagggct gcctgccatc gttttgttgt caaaaaaacg tggtcagtgg
901 tggtggagag caatggtgtc gatccaggaa aggcccaatc cagttcctat
951 tatgggcctg gaccttgtaa tcagattaag tcctgcaata agttctttaa
1001 gaggctgggt gtgtcaacgg agtggaaaaa tagttccacg ggggatgttg
1051 gtgatataaa ggaaggagcc ctttacattg taggtgctcc ttcccagaag
1101 tctgatgtat atgtaaatgg ttatttccga gtgtacttca agtccgttgg
1151 caatcaataa aaatttatta ttatgaatat tttacattgt gcaagtaggt
1201 agaaattcaa tatgttacat tacacacgaa ataagcaaaa aaaacacacc
1251 aaaaacaaaa gtacactacc cacgataact tataactata gcttaatccc
1301 gtatgaggag aggcacgttc agtgactcga cgattcccgg gcaaaaaaag
1351 ttacgccgtc atccatataa tggatctcac aattgtctgt aaagtattct
1401 ttctgatgct cagacatagc aggaatccag tcctcatctc tatttgttaa
1451 aattatggaa gggacaccac cttttatttt cttctttttt ccatacttag
1501 ggttgacagt gaagtcgaac tggcaaccta ttaattgctt ccacaatggg
1551 acgaacttga aggggatgtc gtcaatgaca ttgtaggtcg cgtgttcgtc
1601 gtacgtggtg aagtcgatgg tcccattcca gtagttgtgt cgtccgaggc
1651 ttctagccca ggtggtcttt ccggtacgag ttggtccgca gatgtagagg
1701 ctggggactc tagctccagt ccttcgcggt tcctggttag atcggccatc
1751 cattcaaggt aagattgagc ttgctgatat gaaactggat ggacaagagt
1801 gtaggcgtcg atgcttactt ggtacaggtg tgtatccctc cattgtgcta
1851 gatcctcgtg gcagcggaga tctgactcag tgaacggcga cacatatgct
1901 tcaggttgtg gagggaatag cttgtttgcg gaatattcaa gccaaagctt
1951 ggtagcccat tcatgtggga actcctccat gatcatgtca agatattcct
2001 ccttagacgt tgcagtctgg ataatagttc gccatcgtgc gtcagatttg
2051 cgaggagaga ctttatgatc tctgaaatct cctcttgttt taatatctcc
2101 gtccttggaa atgtattcaa ggacttgttt agagtttcta gctggctgga
2151 tattagggtg atttccttca aaatcgaaaa aagaaggatc cctaatccaa
2201 ggttttttat caagctggat aagagcatga cagtgggtag tgccatcttg
2251 atgaagctca atagcaacac caaggaagaa aataagaaaa ggtgtgagtt
2301 tctcccagag aaactcgaat aaatcatctc tttgagatga gcatttaggg
2351 taggtaagga aaacatattt tgattggaat ctgaagttct tgtttgcaga
2401 aggcatgttt gttgtgactc caagggttgg cttgaaactc tatcttataa
2451 ccggcgtgga gacttggaga caagggtatt ttggtcattt aggctgggta
2501 ttcgaataat gacatggcag tgacttaaag acgaagtctt tgcgaaagcg
2551 ataaaagggg ggagccacgc cgaaattaat att