Sequence of DPV Sugarcane mosaic virus
Sugarcane mosaic virus isolate ARG-627 polyprotein gene, partial cds.
ACC No: JX237866
Dated: 2012-09-05 | Length: 2689 | CRC: 1899841001
ID JX237866; SV 1; linear; genomic RNA; STD; VRL; 2689 BP.
XX
AC JX237866;
XX
DT 05-SEP-2012 (Rel. 114, Created)
DT 05-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE Sugarcane mosaic virus isolate ARG-627 polyprotein gene, partial cds.
XX
KW .
XX
OS Sugarcane mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-2689
RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.;
RT "Large Scale Mosaic Virus Survey in Sugarcane Reveals Considerable Genetic
RT Variability; Implications for the Design of a Resistance Gene Mediated by
RT RNA Silencing";
RL Unpublished.
XX
RN [2]
RP 1-2689
RA Gomez M., Rago A.M., del Vas M., Silhavy D., Serino G.;
RT ;
RL Submitted (25-JUN-2012) to the INSDC.
RL Biotechnology, Chacra Experimental Agricola Santa Rosa, CC # 8, Colonia
RL Santa Rosa, Salta 4531, Argentina
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CC ##Assembly-Data-START##
CC Assembly Method :: DNASTAR Lasergene 7 v. 7.2.1(1).410
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2689
FT /organism="Sugarcane mosaic virus"
FT /host="sugarcane"
FT /isolate="ARG-627"
FT /mol_type="genomic RNA"
FT /country="Argentina"
FT /collection_date="2008"
FT /db_xref="taxon:12224"
FT CDS <1. .2478
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains coat protein"
FT /protein_id="AFQ91293.1"
FT /translation="ECIQDNLQVVAKCPGQLVTKHVVKGPCPHFQLYLSTHDEAKAYFT
FT PLLGKYDKSRLNRVAFIKDISKYAKPIYIGEINYDVFEKAIERVIRTLRDVGMQQCTYV
FT TDEEEIFKSLNLNAAVGALYTGKKKDYFADFSEEDKAEIVMRSCERLYNGQLGIWNGSL
FT KAEIRPIEKTMLNKTRTFTAAPLETLLGGKVCVDDFNNQFYSHHLEGPWTVGITKFYGG
FT WNRLLEKLPEGWIYCDADGSQFDSSLTPYLINAVLHIRLQFMEEWELGAQMLRNLYTEI
FT VYTPIATPDGSIIKKFKGNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNYCKMF
FT ANGDDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTRGLKCEGIYI
FT PKLEKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFAN
FT LAKEGLAPYIAETALRNLYLGSGIKEEEIEKYFKQFAKDLPGYLEDYNEEVFHQAGTVD
FT AGAQGGGGNAGTQPPATGAAAQGGAQPPANGAAAQPPAAQGSQPPTGGATGGGGAQTGA
FT GETGSVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQ
FT DISNTRATREEFDRWYEAIKKEYELDDTQMTVVMSGLMVWCIENGCSPNINGSWTMMDG
FT DEQRVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLA
FT RYAFDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVS
FT RNMHSLLGVQQHH"
FT 3'UTR 2479. .>2689
XX
SQ Sequence 2689 BP; 870 A; 557 C; 629 G; 633 T; 0 other;
jx237866 Length: 2689 05-SEP-2012 Type: N Check: 693 ..
1 gaatgtatac aagataatct ccaggtcgtt gcaaaatgtc ctggccaact
51 tgtgaccaag catgtcgtta aaggtccatg tccacatttc caactgtacc
101 tgtcaacgca tgatgaagcc aaagcatatt ttactccttt gcttgggaag
151 tatgataaga gcagactaaa cagagtggcc ttcattaaag atatctcgaa
201 atatgcaaaa ccaatttata ttggtgaaat aaattacgat gtctttgaaa
251 aagccattga acgagtaatt cgcactctca gagacgtggg aatgcaacaa
301 tgcacgtatg tcacagacga agaggagatt ttcaaatcac ttaatcttaa
351 tgcagcagtt ggagcactat acacagggaa gaaaaaggac tacttcgcag
401 atttttcaga agaagataaa gcagaaatag ttatgagatc ctgtgaacgc
451 ttatataatg gacaactggg catttggaat ggatcgctca aagccgagat
501 acgccccata gagaagacca tgctgaacaa aactcgcact tttacagcag
551 cgccattgga aaccttactt ggtggaaaag tgtgcgtcga tgatttcaat
601 aaccaattct attcacatca tctagaaggt ccttggacgg ttggaattac
651 aaaattctat ggaggatgga accgattgct cgagaaactg ccagaaggat
701 ggatttactg tgatgctgat ggctcacaat ttgatagctc cctaacacca
751 tatctcataa atgctgtgtt acacattcga ctacaattta tggaggaatg
801 ggaactaggc gcacaaatgt tacgaaatct gtacactgaa atcgtctata
851 caccaatcgc aacaccagac ggttccataa tcaagaaatt taaaggaaac
901 aacagtggtc agccatcaac cgtagtcgac aacacgctaa tggtcatctt
951 agcattcaat tatgcaatgt tgtcaagtgg aatacaagac aacgaaatcg
1001 acaactattg caaaatgttt gctaatggag acgatctact gttggcagta
1051 catcccgatt atgaacatat actggatggc tttcagactc actttggaaa
1101 ccttggttta aatttcgaat tcaattcacg aacgagggaa aaatcgaact
1151 tgtggtttat gtcaacacgg ggactcaagt gtgagggcat ttacatacca
1201 aaacttgaaa aggaaagaat agtcgccata ctcgagtggg atcgttcaaa
1251 tctacccgag caccgtttag aagccatttg tgcagcaatg gtcgaagcgt
1301 ggggctatcc agatctcata catgaaattc ggaaatttta tgcatggctt
1351 ttggaaatgc aaccatttgc aaacctagcc aaagagggtc tagctccata
1401 tattgcagaa acagcgcttc gtaacttgta tctaggttca ggtatcaagg
1451 aagaggaaat cgaaaagtac ttcaagcagt ttgcaaagga ccttcctgga
1501 tatttagagg attacaacga agaagttttc catcaagctg gaacagttga
1551 tgcaggcgct caaggaggag gtggaaatgc cggaactcag ccgccagcta
1601 ctggagcagc agctcaagga ggagctcaac cgccagcaaa tggagcagcc
1651 gcgcaaccac ccgcggctca aggttcacaa ccgcccacag ggggagctac
1701 tggtggaggt ggtgcacaaa caggagctgg tgaaactggc tcagttacag
1751 gaggtcaaag agacaaggat gtagatgctg gtacgacagg caaaatcaca
1801 gtaccgaagc ttaaagccat gtcgaagaag atgcgcttgc caaaagcaaa
1851 aggaaaagat gttttgcatc tggacttcct gctaacatac aaaccgcaac
1901 aacaagacat atcaaacaca agagcaacca gagaggagtt tgataggtgg
1951 tatgaagcca taaagaagga atatgaatta gatgacacac aaatgacagt
2001 cgtcatgagt ggtttaatgg tatggtgtat cgaaaatggt tgctcaccaa
2051 acataaatgg aagttggaca atgatggatg gagacgaaca aagagtcttc
2101 ccattaaaac cagttattga aaacgcatct ccaacgttcc gacaaataat
2151 gcatcatttc agtgatgcag ctgaagcata tatcgagtac agaaactcta
2201 cagagcgata catgccacga tacggacttc agcgaaatct caccgactac
2251 agcttagcgc ggtatgcctt tgacttttac gaaatgaatt caaggacacc
2301 agctagagct aaggaagccc acatgcagat gaaggccgca gcagtccgtg
2351 gttcaaacac acgattgttc ggtctggacg gaaatgtcgg cgagactcag
2401 gagaatacag agagacacac agctggcgac gtcagtcgca acatgcactc
2451 tctgttggga gtgcagcagc accactagtc tcctggaaac cctgtttgca
2501 gtacctatag tatgtactaa taatgtatgt cagtgaggtt ttacctcgtc
2551 tttactatat tatgtatgta cttaaagcgt gaaccagtct gcaggacaca
2601 gggttggacc cagtgtcttc tggtgtagcg tgtactagcg tcgagccacg
2651 tgacggacag cactgagtgt ggctttgcca ttggtgctg