Sequence of DPV Tomato chlorotic spot virus

Tomato chlorotic spot virus isolate T18-H nucleocapsid protein (N) gene, complete cds.

ACC No: JX244197

Dated: 2012-09-16 | Length: 1408 | CRC: -873817711

                
ID   JX244197; SV 1; linear; genomic RNA; STD; VRL; 1408 BP.
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AC   JX244197;
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DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Tomato chlorotic spot virus isolate T18-H nucleocapsid protein (N) gene,
DE   complete cds.
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KW   .
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OS   Tomato chlorotic spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-1408
RA   Londono A., Capobianco H., Zhang S., Polston J.E.;
RT   "First record of Tomato chlorotic spot virus in the USA";
RL   Trop Plant Pathol 37:0-0(2012).
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RN   [2]
RP   1-1408
RA   Londono A., Capobianco H., Zhang S., Polston J.E.;
RT   ;
RL   Submitted (27-JUN-2012) to the INSDC.
RL   Plant Pathology, University of Florida, 1453 Fifield Hall Hull Rd,
RL   Gainesville, FL 32611, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1408
FT                   /organism="Tomato chlorotic spot virus"
FT                   /segment="S"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="T18-H"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="May-2012"
FT                   /db_xref="taxon:12851"
FT   gene            complement(472. .1248)
FT                   /gene="N"
FT   CDS             complement(472. .1248)
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AFR53116.1"
FT                   /translation="MSKVKLTKENIISLLTQAGEIEFEEDQNQAAFNFKTFCGENLDSI
FT                   KKMSITSCLTFLKNRQSIMKVVNQSDFTFGKITIKKNSGRVGANDMTFRRLDSMIRVKL
FT                   IEETGKAENLAIIKSKIASHPLVQAYGLPLTDAKSVRLAIMLGGSIPLIASVDSFEMIS
FT                   IILAIYQDAKYKDLGIEPSKYNTKEALGKVCTVLKSKGFTMDEAQIQKGKEYVTILSSC
FT                   NPNAKGSIAMEHYSEHLDKFYAMFGVRKEAKISGVA"
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SQ   Sequence 1408 BP; 401 A; 251 C; 204 G; 552 T; 0 other;

jx244197 Length: 1408  16-SEP-2012  Type: N  Check: 361  ..

       1  actggatcct tttgtttttg ttttttgtta tttttattta tttttattta
      51  acacacacaa tccacacaaa caattagtat ttaattttta tttatttcaa
     101  tttgttttgt ttttatttag tttttattca acacacacaa tccacacata
     151  taatttttat ttaattttta tttaatttta tttaatttta cttaattttt
     201  atttatttta atttgttttg tttttatttt agtttttatt taacacacac
     251  aatccacaca tataattttt atttaatttt tattttattt tacttaattt
     301  tagttaattt ttatttaatg aaatctaaca cacttaatct gaacttaaca
     351  cactttaaca cacttagcta aatttgacac acttaactga acattaacac
     401  acttagtatt atgcatctat agattagcac atttaataac atgcatctct
     451  taaatagatt ttaagaagct cttatgcaac acctgaaatt ttggcttctt
     501  tccttactcc gaacattgca tagaatttgt caagatgctc actgtaatgt
     551  tccatagcaa tgcttccttt agcattggga ttgcaagagc tgagtattgt
     601  tacatattct ttccctttct gtatttgtgc ttcatccatt gtaaatcctt
     651  tactttttaa cacagtgcag acctttccta aagcttcttt agtgttatac
     701  ttcgaaggct caattccaag atctttatat ttagcatctt ggtatatggc
     751  aaggatgatg ctgatcattt caaagctgtc cacagaagca atcagaggga
     801  tactacctcc tagcattatg gcaagcctca cagactttgc atctgtcaga
     851  ggcagaccat aagcttgaac aagaggatga gaggcaatct tagacttgat
     901  aatagcaagg ttttctgctt tcccagtttc ttcaatcagc ttaactctta
     951  tcatactatc aagccttctg aaagtcatat cgttagctcc aacccttcca
    1001  gaattctttt tgattgtgat tttcccaaag gtaaaatcac tttggttcac
    1051  aactttcatg atgctctggc gatttttcag gaaagtcaaa catgaggtaa
    1101  tgctcatttt cttgattgaa tcaagatttt ctccgcaaaa agtcttgaag
    1151  ttgaatgcag cttgattttg atcttcttca aactcgattt ctccagcctg
    1201  agttagaaga gagataatgt tctctttggt gagcttgacc ttagacattt
    1251  tggcagtgta gatctagacc gctctcgaga gatgtgattc aaggtaagaa
    1301  agtacgactc tgtagaccgc agtcgctact tatcctggca atgtgatgat
    1351  ttgtgttgct gagtagtatg tttttgaata aaattgacac aattgctctg
    1401  gatccggg