Sequence of DPV Tomato chlorotic spot virus

Tomato chlorotic spot virus isolate T36-H nucleocapsid protein (N) gene, complete cds.

ACC No: JX244198

Dated: 2012-09-16 | Length: 1455 | CRC: -97762357

                
ID   JX244198; SV 1; linear; genomic RNA; STD; VRL; 1455 BP.
XX
AC   JX244198;
XX
DT   16-SEP-2012 (Rel. 114, Created)
DT   16-SEP-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Tomato chlorotic spot virus isolate T36-H nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Tomato chlorotic spot virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-1455
RA   Londono A., Capobianco H., Zhang S., Polston J.E.;
RT   "First record of Tomato chlorotic spot virus in the USA";
RL   Trop Plant Pathol 37:0-0(2012).
XX
RN   [2]
RP   1-1455
RA   Londono A., Capobianco H., Zhang S., Polston J.E.;
RT   ;
RL   Submitted (27-JUN-2012) to the INSDC.
RL   Plant Pathology, University of Florida, 1453 Fifield Hall Hull Rd,
RL   Gainesville, FL 32611, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1455
FT                   /organism="Tomato chlorotic spot virus"
FT                   /segment="S"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="T36-H"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="May-2012"
FT                   /db_xref="taxon:12851"
FT   gene            complement(519. .1295)
FT                   /gene="N"
FT   CDS             complement(519. .1295)
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AFR53117.1"
FT                   /translation="MSKVKLTKDNIISLLTQAGEIEFEEDQNQAAFNFKTFCGENLDSI
FT                   KKMSITSCLTFLKNRQSIMKVVNQSDFTFGKITIKKNSGRVGANDMTFRRLDSMIRVKL
FT                   IEETGKAENLAIIKSKIASHPLVQAYGLPLTDAKSVRLAIMLGGSIPLIASVDSFEMIS
FT                   IILAIYQDAKYKDLGIEPSKYNTKEALGKVCTVLKSKGFTMDEAQIQKGKEYATILSSC
FT                   NPNAKGSIAMEHYSEHLDKFYAMFGVRKEAKISGVA"
XX
SQ   Sequence 1455 BP; 408 A; 251 C; 211 G; 585 T; 0 other;

jx244198 Length: 1455  16-SEP-2012  Type: N  Check: 2054  ..

       1  actggatcct tttgtttttg ttttttgttt ttatagtttt tttgttgttt
      51  tttgttttta tatatagttt tttgttattt ttatttattt ttatttaaca
     101  cacacaatcc acacaaacaa ttagtattta atttttattt atttcaattt
     151  gttttgtttt tatttagttt ttattcaaca cacacaatcc acacatataa
     201  tttttattta atttttattt aattttattt aattttactt aatttttatt
     251  tattttaatt tgttttgttt ttattttagt ttttatttaa cacacacaat
     301  ccacacatat aatttttatt taatttttat tttattttac ttaattttag
     351  ttaattttta tttaatgaaa tctaacacac ttaatctgaa cttaacacac
     401  tttaacacac ttagctaaat ttgacacact taactgaaca ttaacacact
     451  tagtattatg catctataga ttagcacatt taataacatg catctcttaa
     501  atagatttta agaagctctt atgcaacacc tgaaattttg gcttctttcc
     551  ttactccgaa cattgcatag aatttgtcaa gatgctcact gtaatgttcc
     601  atagcaatgc ttcctttagc attgggattg caagagctga gtattgtagc
     651  atattctttc cctttctgta tttgtgcttc atccattgta aatcctttac
     701  tttttaacac agtgcagacc tttcctaaag cttctttagt gttatacttc
     751  gaaggctcaa ttccaagatc tttatattta gcatcttggt atatggcaag
     801  gatgatgctg atcatttcaa agctgtccac agaagcaatc agagggatac
     851  tacctcctag cattatggca agcctcacag actttgcatc tgtcagaggc
     901  agaccataag cttgaacaag aggatgagag gcaatcttag acttgataat
     951  agcaaggttt tctgctttcc cagtttcttc aatcagctta actcttatca
    1001  tactatcaag cctcctgaaa gtcatatcat tagctccaac ccttccagaa
    1051  ttctttttga ttgtgatttt cccaaaggta aaatcacttt ggttcacaac
    1101  tttcatgatg ctctggcggt ttttcaggaa agtcaaacat gaggtaatgc
    1151  tcattttctt gattgaatca agattttctc cgcaaaaagt cttgaagttg
    1201  aatgcagctt gattttgatc ttcttcaaac tcgatttctc cagcctgagt
    1251  tagaagagag ataatgttat ctttggtgag cttgacctta gacattttgg
    1301  cagtgtagat ctagaccgct ctcgagagat gtgattcaag gtaagaaagt
    1351  acgactctgt agaccgcagt cgctacttat cctggcaatg tgatgatttg
    1401  tgttgctgag tagtatgttt ttgaataaaa ttgacacaat tgctctggat
    1451  ccggg