Sequence of DPV Narcissus latent virus

Narcissus latent virus isolate NLV5_1 polyprotein gene, partial cds.

ACC No: JX270766

Dated: 2012-09-19 | Length: 1258 | CRC: -632514247

                
ID   JX270766; SV 1; linear; genomic RNA; STD; VRL; 1258 BP.
XX
AC   JX270766;
XX
DT   19-SEP-2012 (Rel. 114, Created)
DT   19-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE   Narcissus latent virus isolate NLV5_1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Narcissus latent virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Macluravirus.
XX
RN   [1]
RP   1-1258
RA   Sochacki D., Komorowska B., Berniak H.;
RT   "Molecular characterization of Polish isolates of Narcissus latent virus";
RL   Unpublished.
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RN   [2]
RP   1-1258
RA   Sochacki D., Komorowska B., Berniak H.;
RT   ;
RL   Submitted (04-JUL-2012) to the INSDC.
RL   Plant Protection, Research Institute of Horticulture, Konstytucji 3 Maja
RL   1/3, Skierniewice, Lodzkie 96-100, Poland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1258
FT                   /organism="Narcissus latent virus"
FT                   /host="Narcissus sp.; cultivar Dutch Master"
FT                   /isolate="NLV5_1"
FT                   /mol_type="genomic RNA"
FT                   /country="Poland"
FT                   /collection_date="19-May-2011"
FT                   /db_xref="taxon:48200"
FT   CDS             <1. .1113
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AFR68860.1"
FT                   /translation="VMHTYLVWLLVTHKDVLLYAQENGLGSVCYMDPCQVFALHYGSSK
FT                   GLEDVKFDNEDESADEDDGDITPDLELQMDVGNLIPEKEKNSQNVNTSDGGKNASNSAA
FT                   GESSKPPENNAGKGADQGDVDPPQGDPLVDDEVVEWVIPKMSPNIGTSPIPVINGKKLW
FT                   KRGVLKSIPKMMFNTTSTMATQAQLTSWVEEVKQALALKTDDAWTVVITNWCIWCANNG
FT                   TSSEVDTSQTMEIRDGFGKVQAIPIEVFVNPAVENGGLRKIMRHFSGITHEILKAGKRM
FT                   TAWGNKRGFTEKSMIPYAFDYYVVTNTTPKTVREQLAQSKAAAIGSGVTRKMVLDGNIQ
FT                   GSHASYERHVDTDNSEYEHGNDVDQRPYLT"
FT   mat_peptide     <1. .219
FT                   /product="NIb"
FT   mat_peptide     220. .>1110
FT                   /product="coat protein"
XX
SQ   Sequence 1258 BP; 345 A; 261 C; 334 G; 318 T; 0 other;

jx270766 Length: 1258  19-SEP-2012  Type: N  Check: 5584  ..

       1  gtcatgcaca catatttggt gtggctattg gtgactcaca aggatgttct
      51  gctgtacgca caagagaacg gtctgggttc ggtttgttac atggacccgt
     101  gtcaggtgtt tgcgttgcac tatggctctt ctaaaggctt agaagatgtc
     151  aagttcgaca atgaagatga gagtgcggat gaggatgatg gtgacattac
     201  acccgacctg gaactccaaa tggatgttgg caacctcatt cctgagaagg
     251  agaagaattc ccaaaatgtg aatacgagtg atggaggcaa gaacgccagc
     301  aactctgccg caggcgagtc aagtaaacct cctgagaata acgcagggaa
     351  gggcgctgat caaggtgatg tggatccacc acagggtgac cccttagttg
     401  atgatgaggt ggttgagtgg gtcattccaa aaatgagccc aaacattgga
     451  acttcaccga taccggtcat caacgggaag aagttgtgga agcgaggagt
     501  attgaagagc atacccaaaa tgatgttcaa cacgacttca accatggcaa
     551  ctcaagccca actcacctca tgggtggagg aggtgaagca agcgcttgcg
     601  cttaaaacag acgatgcatg gacggttgtc atcacgaatt ggtgcatttg
     651  gtgcgctaac aacggcacat cgtctgaagt tgatacgtca caaactatgg
     701  agattcgcga tggttttggg aaggttcagg ctatccccat tgaggttttt
     751  gtgaacccag ctgttgaaaa tggcggttta cggaagataa tgaggcactt
     801  ctctggcata actcacgaga ttttaaaggc tggtaagcga atgacagcct
     851  ggggaaataa gaggggcttt actgagaaat caatgatccc ctacgctttt
     901  gattactatg ttgtcacaaa cacaacgccc aagactgtgc gcgagcaatt
     951  ggcgcagtcg aaggcagcag caattggttc aggtgtgacg aggaagatgg
    1001  ttcttgatgg gaacatacaa gggtctcacg ccagttacga acgccatgtc
    1051  gatacggaca acagcgagta cgagcatggc aatgatgttg atcaaaggcc
    1101  ctatcttact tgaattctgc gttcttgaac gcttgaattc aactatttgc
    1151  attcgctctt tataagtttt ctcctaagct tatttccttt ctctctctct
    1201  tgagcgttaa gggttaaatg ggggtttatt tgccattgtt cctccaatgc
    1251  cctgaaat