Sequence of DPV Maize chlorotic mottle virus
Maize chlorotic mottle virus 32 kDa protein, P111, 50 kDa protein, P31 protein, P7 protein, and coat protein genes, complete cds.
ACC No: JX286709
Dated: 2012-11-28 | Length: 4428 | CRC: 1686926427
ID JX286709; SV 1; linear; genomic RNA; STD; VRL; 4428 BP.
XX
AC JX286709;
XX
DT 31-OCT-2012 (Rel. 114, Created)
DT 28-NOV-2012 (Rel. 114, Last updated, Version 2)
XX
DE Maize chlorotic mottle virus 32 kDa protein, P111, 50 kDa protein, P31
DE protein, P7 protein, and coat protein genes, complete cds.
XX
KW .
XX
OS Maize chlorotic mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Machlomovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-4428
RA Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N.,
RA Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P.,
RA Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Mumford R.,
RA Boonham N.;
RT "Use of next generation sequencing for the identification and
RT characterisation of Maize chlorotic mottle virus and Sugarcane mosaic virus
RT causing maize lethal necrosis in Kenya";
RL Plant Pathol. 0:0-0(2012).
XX
RN [2]
RP 1-4428
RA Adams I.P., Miano D.W., Kinyua Z.M., Wangai A., Kimani E., Phiri N.,
RA Reeder R., Harju V., Glover R., Hany U., Souza-Richards R., Deb Nath P.,
RA Nixon T., Fox A., Barnes A., Smith J., Skelton A., Thwaites R., Boonham N.,
RA Mumford R.;
RT ;
RL Submitted (06-JUL-2012) to the INSDC.
RL Plant Protection, Food and Environment Research Agency, Sand Hutton, York
RL YO411LZ, UK
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Newbler v. 2.6
CC Sequencing Technology :: 454
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .4428
FT /organism="Maize chlorotic mottle virus"
FT /host="Zea mays"
FT /mol_type="genomic RNA"
FT /country="Kenya"
FT /collection_date="Feb-2012"
FT /db_xref="taxon:12138"
FT CDS 109. .978
FT /codon_start=1
FT /product="32 kDa protein"
FT /protein_id="AFV60460.1"
FT /translation="MPSPCTYGDPTFNSRILEAVVADVLGGTEDDGGPSLEEWFDAQTL
FT SDYTNCATDPPMATAHTRENDIKSWTELSENFPDLVRYPESLVETLLDTEHECGHFYDV
FT PDSFQISVTAMFTDRCKCQACDPDFQARSLSRALLGPLPESGDDAEWMEQAYTPDAELF
FT VNEPTDDPIPTTDCKRPIQPTWSVDVYSKQVDSDWGLSDSTNVTVRSASSSLLPAGRGG
FT IFFMCPRPEGIERVCLQVGAKIRSGTPNSGTVTNLPGGTGYGTEWSDDGYETQWSDGPY
FT SIPSGLSD"
FT CDS 128. .3025
FT /codon_start=1
FT /transl_except=(pos:1442. .1444,aa:OTHER)
FT /product="P111"
FT /note="putative replicase"
FT /protein_id="AFV60461.1"
FT /translation="MATLPSIHAFWKLWWPMFSEERKMTVVQALRNGLTRKLFQITRIA
FT QQILRWPPHIRERMTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTMFLIPFRF
FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQTARDLSNPHGLWMSTRNKLTQTGGSVIQQTSRYVRLAVRFSLLAAGAYFSCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP
FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKNDKGELVSC
FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS
FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG
FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYTRIYGY
FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNTSLGNCILATAITHDFVTKL
FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP
FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYA
FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE
FT EYFRSWTPTFEWSTTGILAEIPECLLLKHNPLPPT"
FT CDS 128. .1444
FT /codon_start=1
FT /product="50 kDa protein"
FT /note="putative replicase"
FT /protein_id="AFV60462.1"
FT /translation="MATLPSIHAFWKLWWPMFSEERKMTVVQALRNGLTRKLFQITRIA
FT QQILRWPPHIRERMTSSLGRSLVKTFQTLLGIRKVLSKLCLTRNMNVDIFTMFLIPFRF
FT LSQLCSQIVASARHVIQTFKHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQTARDLSNPHGLWMSTRNKLTQTGGSVIQQTSRYVRLAVRFSLLAAGAYFSCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEQANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK"
FT CDS 2986. .3825
FT /codon_start=1
FT /transl_except=(pos:3190. .3192,aa:OTHER)
FT /product="P31 protein"
FT /note="hypothetical protein"
FT /protein_id="AFV60463.1"
FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRIVLASVVKEFNLGDFDLLDSVHLDENTG
FT HRCRLSRAIGVLDRSNTKIPKDRHTQWRQVAGLPEVESSADVAWKQNPELFEPTRLSLD
FT PTRSETVPHLREQPAPCLKFCLQCQQQLLTKFSRFQCAQGLTSQLERHPDTLGRPSGWQ
FT HNHRCGTQLCSTLCASLGKHSQQTPLADTSQWHSSLITCYQYPLGWRMLPGSCPQLQ"
FT CDS 2986. .3192
FT /codon_start=1
FT /product="P7 protein"
FT /protein_id="AFV60464.1"
FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFN"
FT CDS 3375. .4085
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AFV60465.1"
FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG
FT TTCSMSEILLAVSATTTDQILEIPVCAGIDFPAGTPPRYIGAAKWLAAQSQMWNTIVFN
FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ
FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI
FT LQPALVPGPGLANH"
XX
SQ Sequence 4428 BP; 1197 A; 1116 C; 1116 G; 999 T; 0 other;
jx286709 Length: 4428 28-NOV-2012 Type: N Check: 1269 ..
1 gcggcaacag accccaacgc gctagacacg accttacagt tgactcacgt
51 cttgcatcct gtgagagctt tagcgtggga atttgcccct gactggcaat
101 caggtttcat gccctctccg tgcacatatg gcgaccctac cttcaattca
151 cgcattttgg aagctgtggt ggccgatgtt ctcggaggaa cggaagatga
201 cggtggtcca agccttgagg aatggtttga cgcgcaaact ctttcagatt
251 acacgaattg cgcaacagat cctccgatgg ccaccgcaca tacgcgagag
301 aatgacatca agtcttggac ggagcttagt gaaaactttc cagaccttgt
351 taggtatccg gaaagtcttg tcgaaactct gcttgacacg gaacatgaat
401 gtggacattt ttacgatgtt cctgattcct ttcagatttc tgtcacagct
451 atgttcacag atcgttgcaa gtgccaggca tgtgatccag actttcaagc
501 acggtctctc tcgcgggctc tgcttggccc gttgccggaa tccggagacg
551 atgcggagtg gatggagcaa gcatacactc cagatgcaga attgttcgtc
601 aacgagccca ctgatgaccc cattccaacc acagactgca agagacctat
651 ccaacccaca tggtctgtgg atgtctactc gaaacaagtt gactcagact
701 gggggctcag tgattcaaca aacgtcacgg tacgttcggc tagcagttcg
751 cttctccctg ctggccgcgg gggcatattt ttcatgtgtc ctcgcccgga
801 aggcattgaa agagtatgtc tacaggtggg agctaaaatc cgatcaggaa
851 ctcccaactc gggaacagtc acaaatctcc caggtggaac aggctatgga
901 acagaatgga gcgatgatgg ttatgaaact caatggtccg acggccccta
951 ttctatccct tcaggactgt ctgactaaac acgttctggt tccagagatt
1001 gtggacgaag aaggcacagt gacacaaaaa gagcagtcca catttctcat
1051 ccgtgagttt ggccctgccg tcagaaacct agtgactctc gcaaaactag
1101 aattcggcgg gattccaaag aaaaccactg ccaacgaact cacggtttgg
1151 cggttcctgg tacggaagtg tgagcaagca aatatgaatc caactgactc
1201 ccgtactgcc atttcgatgg ccctgccata tgtgtttatg ccgtgccgta
1251 ctgatgttgg aagagcttca attccactgc gcgatgaatc cattgagatc
1301 tgtcgccaat atcgcgcaca atttgtggag gagacacccc tacggcgagt
1351 attcaacaac ccactgagcg gaaaagcatg gcgtaattgg gttaggcacc
1401 tgggtgggct ggatgaccca gccctattcc aggagctgaa ataggggtgt
1451 cttgaagagt ggcttggggt gcagtctcgg cgcacacgtg cgcggcaccc
1501 caaactccgt agccacttta aagacacgag acacaaaacc cgcagagtgt
1551 tccggattgc aggtttgggc aacctgtatg aatttggggt ccacaacaac
1601 tctgcggtga acctggaacg tggactgatg gaacgagtat tttatgtgaa
1651 aaatgataag ggggaactcg tttcatgccc tgagccaatt agtgggatat
1701 tttggaaaaa tttgaaggga ttcagaaata gcattgttca ccatgtggga
1751 cacagacatc cggtgtcacg agagacgttt ctcgcttact atacagggcc
1801 aaagcgcacc atgtatgaga aagcggtgaa ttccctctac gaaatgcctg
1851 tctcttatga cgatgctaaa ctgaaaacat ttgtcaaagc agaaaagatc
1901 aatctcacta agaaagctga tcctgtacca cgtgtgatcc aaccccgtgc
1951 tccccggtac aatgtggaac tgggtaggta tttgagaccg gttgagcatc
2001 caatctacca tgccatagac aagatttggg gtggtccgac tatcatgaaa
2051 ggttactcgg ttgaacagat tggaagacac atcgaaaacg cgtttcgatc
2101 gttcaccgat ccagtagcca ttggatttga tgcaagtcgg tttgatcaac
2151 acgtgagtgt tgaagctcta cgctgggaac atagcgtata cacaaggatt
2201 tatggctatc cagagcttct cacacaattg ctgcggtggc agattcacaa
2251 tcgtggaaca gcatacgctt cagacggcgc gttcaactac caggtggacg
2301 gtaaacgcat gagtggagac atgaacacat cattgggcaa ttgcatcctg
2351 gccacagcaa tcacacatga cttcgtgacc aagctgggga tcccagccag
2401 attaatcaac aatggagatg acaacgtcct gatctgtccg gcagtggagg
2451 taggcagagt cagacaggaa ctgtacagac attggttgaa ctacggattt
2501 gaagtcatat cagaagaacc tgtatacatc cttgaacagg ttgagttttg
2551 ccagatgcga ccagtctttg acggtacaca atacaccatg atgagagacc
2601 cacgcaccac catgtccaag gatgcatatg ctgttacccc ttttaacacg
2651 ccaaccgcag caaggaggtg gatgagagca gttggggaat gcggactcag
2701 ccttacagga ggcctccccg taaagcagga atactatgct gctctcgtga
2751 aacacggact agatccgaaa aacattaaac agggaaaaga ctttgacagt
2801 gggctatatt atcttagcaa actatccaat cgcaaatggc aggaggtcca
2851 agaaagcgct cgttactcat tctggcttgc cttcgggtac acaccagatg
2901 aacaacgagc gttagaggag tattttagat cttggactcc tacgtttgaa
2951 tggtccacaa cgggtatttt ggcagaaatc cccgaatgtc ttcttctcaa
3001 acacaatccc ctcccaccga cgtagcccgc agacaacaga ccggcactgc
3051 cgtgcgatcc gaagataacc atcgcaatca gttggaaaac attgctgttg
3101 gaaaactcac caaatctgaa ggagcacccg cccaacagaa cgtgattatt
3151 gcaaaagagg tggttatcaa taaccacttc aatttcaact gagctggagt
3201 gtgtgtgtgt agaatcgtcc tggcctcagt ggttaaggaa tttaatcttg
3251 gggattttga tctcctcgat tctgttcatc ttgacgaaaa cacaggacac
3301 cgttgccgtt tatcacgagc catcggtgta ctcgatcgat caaacacaaa
3351 aattccaaaa gatcgacata cacaatggcg gcaagtagcc ggtctacccg
3401 aggtagaaag cagcgcggac gtagcgtgga agcaaaatcc agagctattc
3451 gagccaaccc gcctgtccct cgacccaacc cgcagcgaaa ccgtccccca
3501 cctgcgggaa caacctgctc catgtctgaa attctgcttg cagtgtcagc
3551 aacaactact gaccaaattc tcgagattcc agtgtgcgca gggattgact
3601 tcccagctgg aacgccaccc cgatacattg gggcggccaa gtggctggca
3651 gcacaatcac agatgtggaa cacaattgtg ttcaactctg tgcgcatcac
3701 ttgggaaaca ttcacagcag acaccactag cggatacatc tcaatggcat
3751 tcctctctga ttacatgcta tcaataccca ctggggtgga ggatgttgcc
3801 aggatcgtgc cctcagctac aatagctctg aagaacagag ggccgtccat
3851 tgttatgcca caaaaccgca ctgtgttcag gtgtatacag gctggtcagt
3901 ttgctgcgtt gggcagcgcg gctgacaagc aaatgtattc tcccggacga
3951 ttcattgtgg ctatccccaa agctagtgca acacaagcgg taggccaaat
4001 caaaatctcg tactccgtgt cctaccgtgg agcagcaatc ctacaacctg
4051 ccctggttcc aggcccaggg ctggcaaatc attgagcata aggtgagccg
4101 gcatgaggtt gcaagaccgg aacaaccagt ccttctggca gagtcctgcc
4151 aatccaaagt gtctgggagc ctaaatcgta tactagtagt ttgcgtgatg
4201 accatgactg gagagtgggc ggcggctgcc aaccgcagac tgggcgtata
4251 tagtaagcct tgacccaccc atggaaaaca cgtatttacg aacggtacga
4301 catggtaact ggatacactt aaccctgggg caagtagatg ctaggaaact
4351 agcatcgggc cgcccacgag ggtttctgaa ctcaacggag tagaacgggg
4401 gggggtaatg gcccctctct tccggccc