Sequence of DPV Tobacco ringspot virus
Tobacco ringspot virus strain Aeonium segment RNA1, complete sequence.
ACC No: JX304792
Dated: 2012-09-18 | Length: 7549 | CRC: -256409682
ID JX304792; SV 1; linear; genomic RNA; STD; VRL; 7549 BP.
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AC JX304792;
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DT 18-SEP-2012 (Rel. 114, Created)
DT 18-SEP-2012 (Rel. 114, Last updated, Version 1)
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DE Tobacco ringspot virus strain Aeonium segment RNA1, complete sequence.
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KW .
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OS Tobacco ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN [1]
RP 1-7549
RA Sorrentino R., Alioto D., Rubino L.;
RT "Sequence analysis of Tobacco ringspot virus isolated from Aeonium";
RL Unpublished.
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RN [2]
RP 1-7549
RA Sorrentino R., Alioto D., Rubino L.;
RT ;
RL Submitted (03-JUL-2012) to the INSDC.
RL Dipartimento di Arboricoltura, Botanica e Patologia Vegetale - ARBOPAVE,
RL Universita di Napoli Federico II, Via Universita, 100, Portici, NA 80055,
RL Italy
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FH Key Location/Qualifiers
FH
FT source 1. .7549
FT /organism="Tobacco ringspot virus"
FT /segment="RNA1"
FT /host="Aeonium sp."
FT /strain="Aeonium"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /collection_date="Mar-2011"
FT /db_xref="taxon:12282"
FT CDS 104. .7048
FT /codon_start=1
FT /product="polyprotein P1"
FT /protein_id="AFR67086.1"
FT /translation="MGFHCPVLNCSFHNVDWSRKALKEEGLTFSMRCPGACCGALLQRR
FT EQQDVKQVDSAPASRKSVDSATPKCLCWLASVGVSRCPKHSPVASATKSKSPPPCVEKS
FT KSAPRAAVSASPLKKQNCDIVVAIGPPVDLELVYPALCGNGTATPKKVEKKSLNEVVLE
FT KRAEYQARTVVPPPGPIRVVKTAAAPVKAERTKFPRGAVVYNGINFFDAKGRVVLSAGA
FT LKILRGIKRLRQQQARSARRLAACRKARLARFEVMVPGLLKKASEAQFGGFRYVDLNAP
FT KSANLACKMPKKKMKKTTKKVAGSASPVEEEINWDDFIIPDSERTASPMKEEKKSRQPL
FT VPNCLGFGWWRPASGSLWSSVLHCQRVCRGTFLAASAEANLVLAGTDDELLSVWARISA
FT SVVDLSAHYPIPTLLENYSALSECSLEELKGVAVQLDSEYQELGPPTQYTCGLSSWARG
FT AGKLVADFISPSFERIAGIANGVLDKAYTLSRAVVDQIFAKMKSLFYDCFGHLMGHLNV
FT LLSTVESFWSRATTWIMNILEKTHDAIKVLRDASVWSLLLILVGGMILLSERFLCSLGI
FT IGKPGTILGIFLATFLGIFGYTFFKKDDTLVSDLLFVFKTAITGLFRTKPGPPGSPIII
FT DGDVVIPEPHHEMSTCSFLGGLDIAIAAIGNVGASILSFKMGTLQYAAKIATCLDQLRK
FT GKDVLKEMTCWLIETLGQLWNKITGREATFFDEVSAIIAVDIREWLEESQNLCLAAQTF
FT SIGDKIVLEQCERLIADGHKLLRGMGDTDRKLSSSFLSTIQRKVTDLEKIHTQSVRAGY
FT FEGRRMEPFWVYIHGPSHCGKSLLMEPMSRELLRAGGYSEASIYTKNSCDKYWSRYRRQ
FT ACVQIDDLSAGKTDPSLESQLINLVASKEVPLDMAEVEDKGILFDSAILVTSSNTAHVP
FT TNANVNHMEAYKNRQNIVIQCRRKPEYSTLGVELEGTFQAFDPRNPQASIECMIQHRET
FT HAPLTGWISAGAAMAEAVNQFRLHREKEMILQSNHLSSFRPAHPIYTECATFLSMYARD
FT ASFVPPVDLGCKWQVPAGFSTIAAVDGRVFGFSQLGVCSEIKTGLEFSEEMEQYTLEKF
FT APNITRTLASQSRFKLVGAFLKGMVRDEDNVASLKSLGPKSTATQREFYETLGLAERVY
FT LRAIQKRINKIRDDPGFEVDKLHAKLLSIVAQSYEFVKEKGPKIFPLLMGFIVVVFACY
FT GFVMPLLSFASGGSAVGGMVAMEQMTAASVISSGSSPVHHRSRAPPIQPRYARHRIAGS
FT TPDEAFQYEELMVVLYVDSTTAPVVNAIRGPGRSLFMTEHQAMAIPNNSTVVAHFAGRE
FT CVEIHWEHDTARKGKREETEIIQYRCPSIPELPSKFRKYFEYDLERDLPGPFTIDASVY
FT RMKSPGSVELELVNWTNHDAELITKALVISDPFGEDRYRREYPRYIRYRRQAQLHDCGA
FT ICVTKINGHHRVVGLLISTDKYNTGVGLLPSALHMTTCSLSYVPEEWEDAPRGLKKRGW
FT KHASELPHMPSKTQYVKVPEEFEIPYENPKIPSVLVADDPRTIGTPVEGQDPVLVAMEK
FT FYEPMLDFDDTFVAGSTERDLFEQVCDDIVQTWYDAGACFEDVDDDVVINGNDDFDKLI
FT MDTSEGYPYVLERSHGDKGKTRYFEGGPGAYTLKPGTTVFHDYHALQQEVSVEGGIPEM
FT VCIECPKDELLPRRKVLEKLGTRNFEILELPKNMLFRKKYLSWALFLTEMRWCLPCQVG
FT IVVQGREWGLLMDRIASKNSVAYNCDYSKFDGLMSCQVLNAIGKMVNRCYSNENPNFRG
FT RGGEVPGSPPQLARHNLLMSIFGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIR
FT YVYKTVVPSPQYDRFESFVSLVTYGDDNLISVDASMASIFTGEVIKKTLARKGVTITDG
FT SDKLSPTLEAKPIAQLDFLKRSFLVEGGQVFPALDLSCIFSSLKHVRAEGADVIPILHQ
FT NVQNALQELYYRRDKEQFDYVRTFYLERIPVWGTGKNRLIDWSYAHRHWISRYTGDPSA
FT NPAGVVDILVDPRYKSFLLPAGPADWCMPIADRFFVCGPKFYPQGHSFTVCFNRLAAGE
FT NGVQIKPVHAATQGAMPTSKFVDSFRSVKRREELNLVLSAYDTGANIYFKGCAPYNDIW
FT ACAIAFCSAFGIAQKEILLALHDNSKPIGASSLRSYFNHKIVGDGCARRLEIYSTKPRA
FT DIVKRVLPQVQCVHIDYEPGFSSKPTTHLRRCTDSGADGGKAMYIVQGLGKTAAKLVCS
FT DLCDGHLASCTNSFEKMVIDLFKQSCF"
XX
SQ Sequence 7549 BP; 1853 A; 1594 C; 1866 G; 2236 T; 0 other;
jx304792 Length: 7549 18-SEP-2012 Type: N Check: 6685 ..
1 ttgaaaattc tctcacacgg ttcgccttta ctcaactctc actttctctc
51 tttaattgtt ttgagatttt gataaatttt gttttgagtg atccactgtg
101 actatgggct ttcactgccc agtcctgaat tgctccttcc acaatgtgga
151 ttggagccgt aaggccctca aagaagaggg ccttactttt agcatgcgtt
201 gtcctggcgc atgctgcggt gctcttttgc agcgccgtga gcaacaggat
251 gtgaagcagg tggatagcgc ccctgcgtcc cgaaagagcg tggatagcgc
301 cacgccaaaa tgcttgtgct ggcttgccag cgtgggtgtc tctcgatgcc
351 ccaagcattc tcccgtggct tcggccacca aatccaaatc ccctccacct
401 tgtgtggaga aatccaaatc tgcaccacgt gcagcagttt ctgcttctcc
451 tctcaagaag cagaactgcg acattgtggt tgcaattggt ccccctgtgg
501 accttgagct ggtctatcca gctctctgtg gaaatgggac tgccaccccc
551 aaaaaggtgg aaaagaagag cctcaatgag gttgttctgg aaaaacgggc
601 tgagtatcaa gcccgtactg ttgtcccacc acctggtcct attagggtgg
651 tgaagaccgc tgctgccccg gttaaggcag aacgcaccaa gttcccacgt
701 ggagctgtgg tgtataatgg catcaatttc tttgatgcca agggccgtgt
751 ggtcctgagt gctggtgcac tcaaaatttt gcgcggaatc aagagactcc
801 ggcaacaaca ggcgcgatct gcgcgccgcc ttgcggcatg ccgcaaggct
851 cgcttggccc gttttgaggt catggttcct ggccttctta agaaggcatc
901 tgaagcccaa tttgggggct tcagatatgt tgatcttaat gcgccgaaga
951 gcgcaaattt ggcatgcaag atgccaaaaa agaagatgaa gaagaccacc
1001 aagaaggtgg ccgggtctgc ctcccccgtt gaggaggaaa tcaactggga
1051 tgatttcatc attccagatt ctgagaggac tgcctccccg atgaaggagg
1101 aaaagaaatc caggcagccc ctggtgccca actgcttggg ctttggctgg
1151 tggcgaccag cctctggttc tctttggagc tctgtgctcc actgccagcg
1201 tgtctgtaga ggcacatttc ttgctgcctc tgctgaggct aatttggtgc
1251 tggcaggcac tgatgacgag ctcctttctg tgtgggctcg tatttcagca
1301 agtgtggtgg atttatctgc ccactatcct attcccacct tgctggaaaa
1351 ttactctgca ctttctgagt gctcccttga agaattaaag ggagttgctg
1401 tgcagttaga ctcagagtac caggaacttg gaccacctac tcaatatact
1451 tgtggtctat cttcttgggc tcgtggagcc ggaaagcttg ttgctgattt
1501 tatcagccca agttttgaac ggatagcagg catcgcaaac ggtgtacttg
1551 acaaggccta tacgctgtcc agagcagttg tggatcaaat ctttgccaag
1601 atgaaatccc tcttctatga ctgctttggg catttgatgg gtcaccttaa
1651 tgtcctgctt tctactgttg aatccttttg gtctcgtgct accacttgga
1701 ttatgaacat tttagagaaa acgcacgatg ccatcaaagt cctccgtgat
1751 gcttcagttt ggagtttact ccttattttg gttggaggta tgatcttgtt
1801 gtcagagaga tttttatgtt ctcttggtat tattggaaag cctggtacaa
1851 tactgggcat ctttttggca acttttcttg gcatttttgg atacacgttt
1901 tttaagaagg atgacactct tgtgtctgac ttgctttttg tattcaaaac
1951 tgctattact ggtctgttcc ggacgaagcc tggtcctcca ggatcaccca
2001 tcataattga tggcgatgtg gtgataccgg aacctcatca tgagatgtcc
2051 acctgtagtt ttctgggcgg gttggacata gctatcgcag ctattggcaa
2101 tgttggtgct tccattcttt catttaaaat gggaacattg caatatgctg
2151 ctaagattgc cacatgtctt gatcaactac gtaagggtaa agatgtcctt
2201 aaggagatga catgctggtt aattgaaact cttggccaac tatggaataa
2251 gattacaggc cgagaagcca ctttctttga tgaagtgtct gccatcattg
2301 cggtagatat tagagagtgg cttgaagaat cccagaattt gtgcctcgct
2351 gcgcaaactt tttccattgg tgataagatc gtgctcgaac aatgcgaacg
2401 tcttattgct gatggccata aactgttgcg gggcatgggt gatactgatc
2451 ggaaactttc cagttctttc ctatctacga tccaaaggaa agttaccgat
2501 cttgaaaaga ttcatactca gtctgtccgt gctgggtatt ttgaaggaag
2551 aaggatggaa cccttctggg tttatattca cggaccctcc cattgtggaa
2601 aatcgctcct tatggagcca atgtcgcgcg agcttctgcg cgctgggggg
2651 tattctgaag cgtcgatcta taccaagaat tcttgtgata aatattggtc
2701 acggtataga cggcaagcat gtgtacaaat tgatgatttg tctgctggca
2751 aaactgatcc atctctagaa agtcagctca tcaatttagt tgcctccaag
2801 gaagttccat tggatatggc agaggttgaa gataagggta ttttgtttga
2851 tagtgccatt ttggtcacgt catctaatac tgctcatgtc ccgaccaatg
2901 ccaatgttaa ccacatggag gcatacaaaa atcgccagaa cattgtaata
2951 caatgtagga ggaagcctga gtactccact cttggcgttg agcttgaggg
3001 aacattccaa gcgtttgatc ccagaaaccc tcaagcttca atagaatgca
3051 tgatccagca tagggaaaca catgcccctt tgactggctg gatctcagcg
3101 ggcgctgcta tggctgaagc agtgaaccaa tttcgtctgc accgggagaa
3151 ggagatgata cttcaatcaa atcatctatc ttccttccgt cctgcccacc
3201 ctatttacac cgagtgtgcc acttttttgt caatgtacgc gcgagatgca
3251 agtttcgtgc cacctgtgga ccttggttgt aaatggcaag tgccagctgg
3301 cttttccact attgctgcgg ttgatggaag agtcttcggt ttctcgcagt
3351 tgggtgtatg ttccgaaatc aagactggtc ttgagttttc agaagaaatg
3401 gaacagtaca cccttgaaaa atttgccccc aacattactc gaacgttggc
3451 ttctcagagt cgatttaaat tggttggggc ttttttgaaa ggaatggtcc
3501 gggatgaaga taatgttgca tcccttaaat cacttggacc aaagagtacc
3551 gccacccaaa gggaattcta tgaaactttg ggtttggcag agagagtcta
3601 cctccgggcc atacagaaaa ggattaataa aatccgtgat gatcctggat
3651 ttgaggtgga taaattacat gcaaaactct tgagcattgt tgcccagtcc
3701 tatgagtttg tgaaagagaa gggaccaaaa attttcccct tgctcatggg
3751 tttcattgtt gtagtttttg catgttatgg atttgtcatg cccctcctgt
3801 cttttgcatc aggaggttct gctgttgggg gtatggttgc tatggaacag
3851 atgactgctg ccagtgtcat atcttctgga tcatctccag tgcaccatag
3901 atcaagagct cccccaatcc aacctagata tgctcgtcat aggattgcag
3951 gatccacacc agatgaagcc ttccagtatg aagagctgat ggttgtgctg
4001 tatgttgatt caacaacagc acctgtggtg aatgcaattc gtggtcctgg
4051 tcgctcacta tttatgacag agcaccaggc aatggctatt cctaacaact
4101 ctactgtcgt tgctcatttt gcaggtagag aatgtgtgga gatccattgg
4151 gagcatgata ctgcaaggaa gggtaagcgg gaagagactg aaattatcca
4201 ataccgctgt ccttccattc ctgaactgcc ctcgaagttc aggaaatatt
4251 ttgaatatga tcttgagagg gacttgcctg ggccttttac aattgatgct
4301 agtgtatata gaatgaagag cccagggagt gttgaacttg agttggtcaa
4351 ttggaccaac catgatgctg agcttatcac caaggcgctt gttatttcag
4401 atccttttgg tgaagaccgg taccggcgtg agtatcctag atatattcgt
4451 tatcgccggc aagcccagct acatgactgt ggggccatct gtgtgactaa
4501 aataaatggt caccaccgtg ttgtcgggct tttaatttct accgacaaat
4551 ataacacggg tgttggtctt cttcctagtg cgctacacat gacgacatgc
4601 tcactgagtt atgtccctga ggaatgggaa gatgcacccc gcggtcttaa
4651 gaaaagagga tggaagcatg caagtgaact ccctcacatg ccttccaaaa
4701 cacagtatgt caaagtgcct gaggaatttg aaattccata tgaaaatcca
4751 aagattccca gtgtgcttgt ggcagatgat ccgcgtacaa ttggtacgcc
4801 agttgaggga caagatccag tgttggttgc aatggaaaaa ttttatgaac
4851 caatgttgga ttttgatgat acttttgtag ccgggagtac agaacgagac
4901 ctcttcgagc aagtttgtga cgatatagta caaacatggt atgatgccgg
4951 tgcttgtttc gaagatgttg atgatgatgt ggtcattaat ggaaatgatg
5001 actttgataa attgataatg gacacatcag aaggctaccc ctatgtgctt
5051 gagcggtcgc atggggacaa aggtaaaacc cgctattttg aaggtggacc
5101 tggggcttac actctgaaac ccggcaccac tgtcttccat gattatcatg
5151 ctttacaaca agaagtcagt gtggaaggag gtattcctga aatggtctgc
5201 atcgagtgtc ctaaggatga attgctgcca cgccgtaagg tgttggaaaa
5251 attaggcact cgtaattttg agatattgga attgcccaag aatatgcttt
5301 ttagaaagaa atacttgtct tgggctttat tcttaactga aatgcgctgg
5351 tgtctcccct gccaggttgg tatcgttgtt caggggagag aatggggttt
5401 actcatggac cgaattgctt caaagaatag tgtagcttac aactgtgact
5451 actctaagtt tgatggtctt atgagttgcc aggttcttaa tgccattggt
5501 aaaatggtta ataggtgtta ctccaatgag aatcccaatt ttagagggag
5551 aggaggagaa gttcctggta gtccacccca gttggctagg cacaatttgt
5601 taatgtctat ctttggtaga aaatgcctag ccagatctca agtttttgag
5651 gtgagagggg gtataccatc tgggtgtgcc ctcacagtct tattgaactc
5701 cgtttttaat gaaatattaa ttcgatatgt ttataagact gtagttccat
5751 ccccccaata tgatcggttt gagagctttg tctctctagt tacatatggg
5801 gatgacaatc tcatctcagt ggacgcttct atggcctcaa tttttactgg
5851 agaggtcata aagaagacac tagcaaggaa gggcgttacc attactgatg
5901 gtagtgataa attgtctcca acgcttgaag cgaagccgat agctcagttg
5951 gattttttaa aacgctcatt tcttgtagaa ggcggtcagg tgttcccagc
6001 acttgacctg agttgcattt tttcctcgct caaacatgtt agagctgagg
6051 gcgccgatgt cataccaatc ctgcatcaaa atgtacagaa tgctttgcag
6101 gagctttatt atcggcgtga taaagaacag tttgattacg ttcgtacttt
6151 ttatctcgaa cgtatacctg tgtggggtac agggaaaaac agactgattg
6201 actggagtta tgcccaccgg cattggatca gtaggtacac aggagatcca
6251 agtgcaaatc ctgccggtgt ggtggacatt ctagttgacc cgcggtacaa
6301 atccttcctc cttccagcgg gtccagctga ttggtgtatg ccaatagctg
6351 ataggttttt tgtttgtggc ccaaaatttt atccacaagg ccactctttt
6401 actgtatgtt tcaacaggct tgctgctggt gaaaatggtg tccagattaa
6451 gcctgtgcat gcagcaacac aaggggccat gcctacatcc aaatttgttg
6501 atagcttccg tagtgtcaaa cggagggaag aacttaattt agttctttca
6551 gcctatgata ctggggctaa tatatatttt aagggatgtg ctccttataa
6601 tgatatctgg gcttgtgcta ttgctttttg ctccgctttt ggaatagccc
6651 agaaggaaat tcttttagct ctgcatgata actcgaaacc cattggtgcg
6701 agttccctgc ggagctactt taatcataag attgtcggtg atgggtgtgc
6751 gcgtagattg gagatatatt ctacaaagcc cagagccgac attgttaaaa
6801 gagttttgcc tcaggttcaa tgtgtgcata tagattatga acctggtttc
6851 tcatctaaac caactacgca cttgcgcaga tgcacagatt ctggtgcaga
6901 tgggggcaaa gctatgtata tagttcaagg gcttggtaag actgctgcta
6951 agctcgtttg ttctgactta tgtgacggcc atcttgcttc atgtacaaat
7001 tcttttgaaa agatggtcat tgatttattt aagcagtcat gtttttaact
7051 tgctgtcatt gatttgatgg cttttgtttg ttgagtcttc taaccaggag
7101 cagcccttct gatctttgtt gattggaaac cttgttgtac ttggtggtta
7151 gttagacgcg tcaataaccg ggatcttaat tgattccgtc ttagtttcct
7201 ggtcctactg gactggtcct gctcttaggt gagtggggaa gctgtataaa
7251 ctcagctttt cgggggtgag agcccgagaa tgtctgtctg tcagctgctt
7301 gtgtaaatga gctttctccg aggatagctc tcctcggcac aagtgaaaac
7351 gactaccgtg gcacgttagt agccagacgg tcggggtaaa atccctagtt
7401 aacaaaatgt gttaggacgt tgtttctggc agctttgttg gtcctattga
7451 gttttctaaa gctgctttgg tattttgtgt gtttgagccc actgttcata
7501 tttggtttgg ggccttgtat gtttcttagt gtcgtgtttg tcccacaca