Sequence of DPV Salehabad virus
Salehabad virus strain I-81 polymerase gene, complete cds.
ACC No: JX472403
Dated: 2012-12-20 | Length: 6376 | CRC: 761295428
ID JX472403; SV 1; linear; genomic RNA; STD; VRL; 6376 BP.
XX
AC JX472403;
XX
DT 20-DEC-2012 (Rel. 115, Created)
DT 20-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE Salehabad virus strain I-81 polymerase gene, complete cds.
XX
KW .
XX
OS Salehabad virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus.
XX
RN [1]
RC Publication Status: Available-Online prior to print
RP 1-6376
RX PUBMED; 23239568.
RA Palacios G., Savji N., Travassos da Rosa A., Desai A., Sanchez-Seco M.P.,
RA Guzman H., Lipkin W.I., Tesh R.;
RT "Characterization of the Salehabad virus species complex of the genus
RT Phlebovirus (Bunyaviridae)";
RL J. Gen. Virol. 0:0-0(2012).
XX
RN [2]
RP 1-6376
RA Palacios G., Savji N., Lipkin W.I.;
RT ;
RL Submitted (09-AUG-2012) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 W 168th Street,
RL 17th Floor, New York, NY 10032, USA
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Geneious v. 4.5
CC Sequencing Technology :: Sanger dideoxy sequencing; 454
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .6376
FT /organism="Salehabad virus"
FT /segment="L"
FT /host="Phlebotomus sp."
FT /strain="I-81"
FT /mol_type="genomic RNA"
FT /country="Iran"
FT /collection_date="1959"
FT /db_xref="taxon:904699"
FT CDS 20. .6310
FT /codon_start=1
FT /product="polymerase"
FT /protein_id="AGA82741.1"
FT /translation="MNELLAKQAHLRQGFSSGALMHYDDETLHLPIPDFFVRRSLEGIL
FT IDLSLDQLDSSSTVGSSLMPNVDVKATSIPNFIHNFTFGHLSSSTDQPFSSKFPVINDG
FT FDDLTPDVIIQSTAGSYHVVEFTTFRGREEGARGAASLKIAKYEQACRNRSVGRNVGLY
FT AIAVHRGGVWTNMIMSKEDVDELCYRMRLAEAIEADIQVVCPEYRMADEEATKLEREMM
FT GIVASIGMDWSKTERMFPNFKKAMFDKFRSNPPNQEYVKDILEKVIAKAQADLITSSFI
FT GDGKPLAERLEMNGRECDYAIDALIIELRSRPNLRSTSDNKSTVQIPPWVFYEGPEGKS
FT LMPLKELMPEGDHPMCSIWTKVCTSAIMEVIERMDDDPESELNFAMSGERTRDDERSRY
FT HRVRVDLNQEEAEYAATLGVNGKKYRNLQAVVDSRTRSKLIFSPDHDTTDLEQFLLCQD
FT YSDFEPLEEAYAPLLEDMDLRLDAQMIHQPTYTHYEGENEFLANHKKILQSPLGSWTQM
FT VSLIGAELSASVKQHVKPNSFVVKRLLNSPLYMLIKPTSSKSHIFVSFALDKKYWIRDL
FT NASTIFKHYIDAGSMFITDFVSYKLSKLTNLCKTNSLYEASLTFWMESFGFCSWESGNV
FT SEKPQSPSLREALYMTKLSLLTLLEDKATTEELQTLLRYIVMEGFVSQPELPKPHKMIA
FT KLPTKLRSELQVYLLHRSLLSMRRIARSPFRLMRFEGQINWSGLFNPLSGSEIREIHPL
FT ISACYNGYFKNKEEETEPSALSAMYKKIIELEHLKPESDDFLGWGDPEEPAMHEFSRSY
FT LKEAVEHAKQFLERIYGRNVMEQIEQDIIRELSSITLERLATLKATSNFNEDWYVYKDV
FT KDKNYTRDKLIVKMSEFAAEGKSLAIEKFEACMSRIEERGAMHICLFKKQQHGGLREIY
FT VMGAEERIVQSVVEAIARSIGRFFSSDTLCNPANKMKIPESHGLRARRHCKGPVWTTAT
FT SDDARKWNQGHFVSKFALMLCEFTSPKWWPIIIRGCSMFTNKHMMMNLEFLRILDCHRE
FT LNIEDDFVQTLFEAYHGNVDVPWISPGCTYLKTSTGMMQGILHYTSSLLHTIHQEFIRS
FT LTFKIFNMKVNPDMSKQIVCDMMQGSDDSSMLISFPSGSDEILTKCKVTAAICFRVKKL
FT LGVYLAIYPSEKSTACTDFVMEYNSEFFFHSQHVRPTIRWIAASCSLPEVETLVARQEE
FT AANLMTSVSEGGGSFSLAACIQHSQCTLHYMLMGMGTSVLFAEYKKAIKKWKDPGLGFF
FT LMDNPIAAGLAGFRYNLFKAITTTNLQKIYAFFMKKVKGTSAYHMQEGVIPETCSVSPG
FT GALILSSSLKWGSRKKFQKLRSRLNIPDDWVEQINDMPQVLYRAPRTGLEITLRIAEKV
FT HSPGVVSSLSTGNAVAKVMAAAVYFLSATIFEDSGRPEFNFLEDSKYSLLSKLAAYDGF
FT NGVDDIEPEDVLFLFPNVEEFHQLDTLIYNKGALDVTHRSSAREATQTRVVVFDHLQTS
FT RCSPEKLVSDKWFGTQKCKIGRTAMEQEWTKLKSTIRWLRDTPSETLDATPLHSHIQVR
FT NFFARMEGKARTVRVTGAPVKKRSGVSKLAMVIRDNFCKTAILNGIEDEVGLTRSVSAE
FT LSKHSLFSVLNGPYTEGAKISMVEKLLLALPEVGINPPDRRSRTNMIGVLQHYAREGEG
FT TIKLLEEIGAGTIGAYVMPQKSMKKDGKVFYYGPGVWRGTMDGISVQIEVDGQPGLPPQ
FT MTRILVSRTREPWILSHSIRAWADDMGVLNTKDMKETVRGDVRHWMYNFKLFGSGHAYG
FT CPLIVVPDELIDFRNINDNDIFLKVRGSVINLFTRAKGIGRDLHIMSYSTSENDISSSS
FT ILSLVNAQLDSCVSDFTVQPSSSWVKCEPLPLEMIRPVLEIAEGLRPIRRIDSDRLREI
FT IRICTEAALRSKVGTIFTFVPISMEMAAPVDMSAMIDLMLEDDDFTSFQEVVEEVMEDM
FT DIMNSYEVDDFSSVDVHLFGPAHFKEMSNLAAISHPLMDKLIDAAISQMSKTGVRRLVE
FT TGKVGHKDLDISKLIFRALGRDPASIITDDFNLDLEYEVTDDMLG"
XX
SQ Sequence 6376 BP; 1880 A; 1278 C; 1589 G; 1629 T; 0 other;
jx472403 Length: 6376 20-DEC-2012 Type: N Check: 1930 ..
1 acacaaaggc gccaaaacga tgaatgaact actagcgaaa caagcccatc
51 tacgtcaggg tttttcaagc ggagctctaa tgcactacga tgatgagact
101 ttacatcttc ctattcctga tttcttcgtg cgcaggtctc ttgaggggat
151 acttattgac ttgtctctgg atcagctgga ttcaagctct acagtaggct
201 catcactaat gcccaatgta gatgtgaaag caacttcaat accaaacttc
251 atccacaact tcaccttcgg tcatctatca tcatcaacag atcagccctt
301 ctcctcgaag ttcccggtca taaatgatgg ttttgacgac ctgacccctg
351 atgtcataat tcaatcaact gctggcagct accatgtagt tgagttcacc
401 acttttagag ggagagagga gggggcaaga ggagcagcat ctctaaagat
451 tgcaaaatat gagcaggcat gtagaaaccg cagcgtaggg aggaatgttg
501 ggctgtatgc tattgcagta cacagaggtg gtgtgtggac caacatgatc
551 atgagtaaag aagatgttga tgagttatgt tacaggatga gactcgcaga
601 agccattgag gctgacatcc aggtggtgtg tcctgaatat agaatggcag
651 acgaagaggc aaccaagctt gagcgagaga tgatgggtat cgtggcatca
701 attgggatgg attggtccaa gactgaaaga atgtttccaa actttaagaa
751 agccatgttt gacaagttca gatctaatcc tccaaatcag gagtacgtaa
801 aggacatctt ggagaaggtg attgcaaaag cccaggcgga cttaatcact
851 tcatccttca ttggagatgg aaagcctctt gcagagagac ttgagatgaa
901 cggcagagag tgtgactacg caattgatgc attgataata gaattgaggt
951 cacgcccaaa tcttcgcagc acatcagata ataagtccac agtccagatt
1001 ccaccctggg tcttctatga gggtccagag gggaagagtt tgatgcctct
1051 caaggagctg atgcctgagg gggatcatcc aatgtgctca atctggacca
1101 aagtgtgtac ttcagccatc atggaagtca ttgaaaggat ggatgatgat
1151 cctgagagtg agttgaactt cgctatgtct ggggaacgca ctcgggatga
1201 tgagaggagt aggtaccata gggtgcgcgt ggacttgaat caggaagaag
1251 ctgagtatgc cgccacccta ggggtcaatg gcaagaagta taggaacttg
1301 caagctgtcg tagattccag gacccgtagt aagttgatct tctctcctga
1351 ccacgacaca acagatttag agcaattttt gctctgccaa gactactcag
1401 attttgagcc tttagaggag gcttatgctc cattactaga ggacatggac
1451 ttgagattag atgctcagat gattcaccaa cctacataca cccactatga
1501 aggggagaat gaattcctgg caaatcataa gaagatactt caatcacctc
1551 ttgggtcatg gacacagatg gtgagcctta taggagctga gttgtcggca
1601 tcagtaaaac agcatgtgaa gccaaattct tttgtggtga agagactcct
1651 gaattctcct ctgtacatgc tgattaaacc cacttcttcc aaaagccaca
1701 tatttgtgtc ttttgctctg gacaagaagt attggattag ggacctgaat
1751 gcttctacaa tattcaagca ctatattgat gctgggtcta tgttcataac
1801 agactttgtg tcttacaaac tgagcaagct caccaacttg tgcaaaacaa
1851 actccctgta tgaagccagc ctcacttttt ggatggaaag tttcgggttc
1901 tgctcatggg agtcaggcaa tgtgagtgag aaacctcaga gcccctcact
1951 aagagaggct ctgtacatga caaagttgtc attgctcact ttactggaag
2001 ataaggcaac tacagaagag ttgcagactc tactgagata catcgtcatg
2051 gaaggattcg tctctcagcc agaactgcca aagcctcaca agatgattgc
2101 taagctaccc acaaagctaa ggtcggagct ccaggtgtac ttgttgcata
2151 ggagcttgct gagcatgaga agaatcgcca ggtctccttt cagactcatg
2201 agatttgaag gtcagattaa ttggtctggc ctcttcaacc ctctatcggg
2251 gtctgagatc agagagatcc accctttgat aagcgcatgc tacaatggct
2301 actttaagaa taaagaggaa gaaacagagc catcagccct atcggccatg
2351 tataagaaaa tcattgaact tgagcactta aagcctgaat ctgatgactt
2401 tctcgggtgg ggggatcctg aagagcctgc catgcatgaa tttagcagaa
2451 gctacctcaa ggaggctgtg gagcatgcaa agcaatttct agagagaata
2501 tatgggagga atgtgatgga gcagattgag caggacatca ttcgagagtt
2551 aagctctata accctcgaga ggcttgcaac acttaaggct accagtaact
2601 ttaatgaaga ctggtatgtt tacaaggatg ttaaggacaa aaactatact
2651 agggacaaat taatcgtgaa gatgtcagag tttgcagctg aaggaaagtc
2701 tcttgcaatt gaaaagtttg aggcctgtat gagcagaata gaggagagag
2751 gagcaatgca catctgcttg tttaagaaac aacagcatgg agggctcaga
2801 gagatttatg tgatgggcgc agaagagaga attgtccaaa gtgttgtgga
2851 agctattgcc agaagcattg ggaggttctt ttcatcagac acattatgca
2901 accctgccaa caaaatgaag atccctgaga gccatggact gagggccaga
2951 cgacattgta aaggcccagt gtggaccaca gcaacctcag atgatgcaag
3001 gaagtggaat caaggccact ttgtgtcaaa atttgcattg atgctatgtg
3051 agttcacaag tcctaagtgg tggccaatca taatcagagg ttgctccatg
3101 ttcaccaata aacacatgat gatgaatcta gagttcctta ggatcttaga
3151 ttgtcataga gagctgaata ttgaggatga ctttgttcaa acactatttg
3201 aagcttatca cggcaatgtt gatgttcctt ggattagtcc agggtgcacc
3251 tatctcaaga cttcaacagg aatgatgcag gggattctac actacacttc
3301 ctcactgcta cacacaattc accaggaatt catcagatca ctaaccttca
3351 agatattcaa tatgaaggta aaccctgaca tgagcaagca gattgtgtgt
3401 gatatgatgc agggttctga tgacagcagc atgctcatta gtttcccctc
3451 aggctccgat gaaatattga ccaagtgcaa ggtcactgca gcgatatgct
3501 ttagagtcaa gaagctactt ggggtgtatc tggccattta cccgtctgaa
3551 aagtcaactg catgcacaga ttttgtgatg gagtataatt cagaattctt
3601 cttccactca caacacgtga ggccaactat cagatggatc gcagcttcgt
3651 gtagtctccc tgaggtagaa acactagtcg caagacagga ggaggctgca
3701 aaccttatga catcagtgtc agagggtggt gggtcctttt ctctggcagc
3751 ctgcatacag catagtcagt gcactttgca ctatatgctc atgggcatgg
3801 gcacctctgt tctatttgca gagtacaaga aggcaataaa aaaatggaaa
3851 gacccagggt tagggttctt cctaatggac aacccgattg cagcaggctt
3901 ggccggattc agatacaatc tgttcaaggc aattacaact acgaatcttc
3951 agaagatcta tgcatttttt atgaagaagg ttaaggggac ttcagcttat
4001 cacatgcagg aaggagttat acctgagaca tgcagtgtca gtcccggagg
4051 tgccctcatt cttagctcgt cacttaagtg ggggtcaaga aagaagtttc
4101 agaagttgag gtctagatta aatataccag atgattgggt agagcagatc
4151 aatgacatgc ctcaagtctt gtacagggcc ccaagaacag gtctggagat
4201 aactcttaga attgcagaga aggttcacag tccaggagta gtgtcctcac
4251 tgagcacagg caatgcagtt gctaaagtca tggctgcagc tgtatatttc
4301 ctttctgcga ccatctttga agactctggc agacctgaat tcaactttct
4351 ggaggactca aaatacagct tgctatccaa gctagcagcg tatgatgggt
4401 tcaatggtgt tgatgacatt gagcctgagg atgtgctctt cctattccca
4451 aatgtggaag agttccatca gctggataca ctaatctaca ataaaggtgc
4501 cttagatgtc acacacagat ccagtgcgcg agaagccact cagactcgtg
4551 tggttgtttt tgaccactta cagacttcaa ggtgctcccc tgagaagctt
4601 gtgtctgata agtggtttgg aactcagaaa tgcaagattg gtagaactgc
4651 catggagcaa gaatggacaa agctaaagtc cactatcaga tggttgaggg
4701 acactccatc agaaactcta gatgcaaccc ccttacacag ccacatacaa
4751 gtccgaaact tcttcgctag aatggagggg aaggctagga ctgttagagt
4801 gactggggcc cctgttaaga agaggtctgg agtaagcaag ttggcaatgg
4851 tgatcagaga caatttctgc aagactgcca tcttaaacgg tattgaggat
4901 gaagttgggc tcactcgatc agtatcagca gagttgtcga agcactcctt
4951 gttctctgtc ttgaatggtc catatactga gggagcaaag atatctatgg
5001 ttgagaagtt actcctggct ctcccagaag ttggaattaa tccccctgat
5051 aggcgatcca ggacaaacat gattggagtg ctccagcact atgctcgtga
5101 gggggaagga accattaaac tgttagagga gattggggcg ggaacaattg
5151 gtgcatacgt gatgccacag aaatcaatga agaaggatgg taaagtgttc
5201 tattatgggc ctggggtgtg gagaggtaca atggatggca tctcagtgca
5251 aatagaggtt gatggacaac ctgggctacc acctcagatg accagaatcc
5301 ttgttagcag aacaagagag ccatggatcc ttagccatag cataagagcc
5351 tgggcagatg acatgggagt cttgaacaca aaagacatga aggagacagt
5401 tcgaggggat gtgaggcact ggatgtacaa tttcaagttg tttggctcag
5451 gccatgctta tggatgtcca ttgatagtgg tgccagatga gttgattgac
5501 tttagaaaca ttaatgacaa tgacattttt ctaaaagtta gggggtcagt
5551 aatcaatcta ttcactcggg caaaaggaat aggtagggat ctgcatatca
5601 tgtcatactc aacctcagag aatgacatta gctctagcag catactctca
5651 ttggtaaatg cccagctgga ctcttgtgtg agtgatttca ccgttcaacc
5701 aagtagttca tgggtgaaat gtgagccact gcctcttgag atgataagac
5751 cagtgctaga aatagcagag ggtctgagac ctattaggag gattgactca
5801 gatagattga gagagataat ccgaatctgc acggaagcag ctctaagatc
5851 aaaagtaggg actattttta cctttgtgcc aatttcgatg gaaatggctg
5901 cgcctgtaga catgagtgcc atgattgatc ttatgttaga agatgatgat
5951 ttcaccagtt tccaagaagt tgtagaagag gtgatggagg acatggatat
6001 catgaacagt tatgaagttg atgatttttc atctgtggac gtgcatctgt
6051 tcggacctgc tcacttcaag gagatgtcta atcttgcagc aatctcacat
6101 ccacttatgg ataagcttat tgatgctgct ataagccaga tgagcaagac
6151 tggagtaagg aggttggtag agacaggaaa agtgggccat aaggatctcg
6201 acatttcaaa acttatattt agagctctag gaagagaccc tgcatctatt
6251 attacggacg actttaacct ggatctggaa tatgaggtca ctgatgacat
6301 gcttgggtag aggctgactg aacaataatg cctactttct tcctacacaa
6351 tgactgtcca tttagtgaat cccatg