Sequence of DPV Salehabad virus
Salehabad virus strain I-81 polyprotein gene, complete cds.
ACC No: JX472404
Dated: 2012-12-20 | Length: 4033 | CRC: 2024232442
ID JX472404; SV 1; linear; genomic RNA; STD; VRL; 4033 BP.
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AC JX472404;
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DT 20-DEC-2012 (Rel. 115, Created)
DT 20-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE Salehabad virus strain I-81 polyprotein gene, complete cds.
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KW .
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OS Salehabad virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus.
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RN [1]
RC Publication Status: Available-Online prior to print
RP 1-4033
RX PUBMED; 23239568.
RA Palacios G., Savji N., Travassos da Rosa A., Desai A., Sanchez-Seco M.P.,
RA Guzman H., Lipkin W.I., Tesh R.;
RT "Characterization of the Salehabad virus species complex of the genus
RT Phlebovirus (Bunyaviridae)";
RL J. Gen. Virol. 0:0-0(2012).
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RN [2]
RP 1-4033
RA Palacios G., Savji N., Lipkin W.I.;
RT ;
RL Submitted (09-AUG-2012) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 W 168th Street,
RL 17th Floor, New York, NY 10032, USA
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CC ##Assembly-Data-START##
CC Assembly Method :: Geneious v. 4.5
CC Sequencing Technology :: Sanger dideoxy sequencing; 454
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .4033
FT /organism="Salehabad virus"
FT /segment="M"
FT /host="Phlebotomus sp."
FT /strain="I-81"
FT /mol_type="genomic RNA"
FT /country="Iran"
FT /collection_date="1959"
FT /db_xref="taxon:904699"
FT CDS 20. .4033
FT /codon_start=1
FT /product="polyprotein"
FT /protein_id="AGA82742.1"
FT /translation="MIELILLFVQCVVLVEPRISLTITSPDYSSLSCFNSAAGPKFLQR
FT KWKTEVSKMGEFDQLCYYNNDIPKRSTPENAEGLVTFAMLSESPSTFSCINEDRSKTAV
FT VHSNGIREDGDAAYVDCEKGTMIHLISSAGDIAPSTDPLKMEHQALRERFDELQRKFSD
FT DKAALNDENRRLRSELEELHKARESLKLVRANQDQNITALNAVIHGLTKKVQDGEVALI
FT GALNQARRDKEALVYLEEDTDRKLEESQSVIESLQKALRNATLSIPRPALVTTMATITL
FT LSSTIILADPRTHIDNRPGISQYGARSSGGAVVADTGCNLILYDSTCTSWALQKNATMF
FT PFFNAHYHKYSLIESIHTTILAEETGSICKILNNSAHKSTKCVKDLMPMKLYCPAGYRY
FT AYYLNSKGMVSGIECDKDYQLSPDCKMCISASPEAKGVMPLQDVFCQTGAVDYNGPVMK
FT LRGVCSIGSKQIRSCKRPTTSYEKVPFITFGKGQKLYLDSLTLRNVESATPEHFVCYEL
FT KGLHGVSAGAHGDAPLKKVDPKKCKCINDTETKLCTGDAVFCSIYQCFKDYPDTMCEVA
FT PGAGIVEAYYGGVWTRPSCIGYENIMVTRESIKTSTPRETACSACVWSCEKEGIKITSH
FT GFKMFSAVACARGSCVSTHQEGSTEILVPYPGLSKMSGGKVGIHISHDDQSTSAHLIVT
FT CDPKPACEVDDCFFCFHGLINYQCHTVTSSLLVSTLSVLVIVATMWLIVRTLQVLKLLS
FT MVTKTPLIWVSLLMKWTLNVFRRCFQTRFENLNEVIGWTPGPRAELRGNVENRRDRGRS
FT VQYYLYATAILLLTAPGSLCCTENVVASSKISRCGMDGQKSLCSLSGVVTLKAGTIGSE
FT ACLTIKGPSEDQVGFLSIKTVSSDLVCHEGDSFWTNHFTPKCMSSRRCHLVSECVSNDC
FT QLWNDTVVSKEFVHMVDNTLMTNNKCFEQCGAAGCGCFNVNPSCLFVHSYLMPTRSEAV
FT KVFECVSWSHRLTLKVSGPKINTRRITLSALSTQIAEWGSITLNIDSEAMNLGNPVSFM
FT RTSSGAMALIDDPFSRIPRKGYLGEVRCSSEAHASRGDRSCLRAPDLIKYRPQLDIVEC
FT TSALVDPYAILMRSSLPQKRGNYIFTPSMDGHNVQAMTSGSINAEFSLLLDNYEVEFQA
FT SSTTCNAAFVNITGCYSCNEGSEVCVKVVASADGSFFAISEESGQAIQFPITRGDNYRC
FT RILHFSRPEVEEQFSYSCGGDKKPLIVRGTLIAVGPHDDRVLGGKSIVVNPKKGTWSIG
FT GWASGLMSWLGGPLKTFGMILGYILLSILIIIVLWLLFKTLVARSIAARQKMM"
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SQ Sequence 4033 BP; 1173 A; 818 C; 958 G; 1084 T; 0 other;
jx472404 Length: 4033 20-DEC-2012 Type: N Check: 5113 ..
1 acacaaagtc ggcttgctta tgattgaatt aatactactc tttgtacagt
51 gtgtggtttt ggttgaacct aggatcagcc taactatcac ctccccagac
101 tactcatccc tcagttgctt taactcagct gcaggaccca agtttctaca
151 aaggaagtgg aaaactgagg tatccaaaat gggagagttt gaccaacttt
201 gctactataa caatgacatt cctaagagat caacacctga aaacgcagag
251 gggctggtga catttgcaat gctttctgag tctccatcca cattttcttg
301 tataaatgaa gatagatcaa aaactgcagt cgttcacagc aatggaatta
351 gagaggacgg ggatgcagca tatgtggact gcgaaaaggg gacgatgatc
401 catctaatct catctgcagg tgacattgcg ccatctactg atccccttaa
451 gatggaacac caagctctca gggaaaggtt tgatgagttg caaagaaaat
501 ttagtgatga taaagctgct ctcaatgatg agaacaggag gctaagatca
551 gaacttgagg aattacacaa ggctagagag tctctaaaac tggtgagagc
601 taatcaagac cagaacataa cagccctaaa tgctgtaatt catggcctca
651 caaagaaagt gcaggatgga gaagttgctc taattggcgc cctaaatcaa
701 gcaagaagag ataaggaagc tcttgtgtac ttagaggagg acactgatag
751 aaaattggaa gaaagtcaat ctgttattga atctcttcaa aaggctctga
801 ggaatgccac tctctctatt ccacgacctg ccctagtgac aacgatggct
851 accatcactc ttttgtccag taccataata ctagcagatc cacgtactca
901 tattgacaac cgccctggaa tttcacaata tggtgcaaga tcctcaggag
951 gggctgtggt tgctgacact ggatgcaatc taatactgta tgatagcaca
1001 tgcacctcct gggcattgca gaagaatgcc acaatgttcc cattttttaa
1051 tgcacactat cacaagtatt ctttaatcga atcaattcac acaacaatcc
1101 tggcagaaga aactgggtcc atctgtaaaa ttctaaacaa tagtgctcac
1151 aagtcaacaa aatgtgtgaa agacctcatg ccgatgaaat tgtactgccc
1201 tgctgggtac cgatacgctt attatctgaa ttctaagggt atggtctcag
1251 gcatagagtg tgacaaggac taccagctat caccagattg caaaatgtgc
1301 atctcagcaa gcccagaagc taaaggtgtg atgcctctgc aagatgtctt
1351 ttgccagaca ggtgctgttg actacaatgg gccagtgatg aagttgagag
1401 gagtgtgttc aatagggtca aaacaaatta gaagctgcaa gaggcctact
1451 acttcttatg agaaggtccc ctttatcaca tttgggaaag gacagaagct
1501 gtatttagac tctctcacac ttcgcaatgt agagagtgcc acccctgagc
1551 actttgtttg ttatgaactg aaagggcttc atggtgtgtc tgcaggggct
1601 catggtgatg ccccactcaa gaaggtcgac ccaaaaaaat gtaaatgtat
1651 taatgacaca gagactaagt tgtgcactgg tgatgctgtg ttttgctcaa
1701 tatatcagtg ttttaaagat tatcctgaca ccatgtgcga ggtggctcct
1751 ggagcaggca ttgttgaggc atattatgga ggggtgtgga caagaccgtc
1801 ttgtataggt tatgagaaca tcatggtcac tagagagtct attaaaacta
1851 gtactcctag ggagactgcc tgctcagcat gtgtatggag ctgtgaaaaa
1901 gaaggtatca aaataacttc acatggcttc aagatgttct cagctgtagc
1951 gtgtgccagg ggctcctgtg tatcaactca ccaggaaggc tctactgaga
2001 tattggtccc ttatcctggt ttgagtaaga tgagcggtgg aaaagtgggc
2051 atacacatat cccatgatga ccaatccaca agtgcacacc taatagtgac
2101 ttgtgaccca aagcctgcat gtgaagtaga tgattgcttc ttttgcttcc
2151 atgggttaat caactaccag tgccacacag tgacaagctc ccttttagtc
2201 agcaccttgt ctgttttggt gattgtggca actatgtggc tgattgtgcg
2251 gacattacag gtactaaagc tgctatcaat ggtgaccaaa acacctctga
2301 tatgggtgtc tctactaatg aaatggactc ttaatgtgtt caggaggtgc
2351 tttcagacaa gatttgagaa tctaaatgag gtcattggct ggactcctgg
2401 ccccagagca gaattgagag gcaatgttga gaatagaaga gatcgtgggc
2451 gatcagtgca atactatttg tatgcaacag ccatattgct cttgacagcc
2501 cctgggtctc tctgctgtac agaaaatgtg gtggcgtcct caaaaatatc
2551 tagatgtggg atggatggtc aaaagtcact ctgtagtttg tctggggttg
2601 tgacactgaa ggctgggact ataggctcag aagcttgctt gaccataaag
2651 ggtccgtcag aggatcaagt tgggttctta tccatcaaaa ctgtatctag
2701 cgacttagtc tgtcatgaag gggatagctt ttggactaat cacttcaccc
2751 caaaatgcat gagttcaaga aggtgccatt tagtgtcgga atgtgttagt
2801 aatgactgcc aactttggaa tgacactgtg gtgtcaaagg aatttgtgca
2851 catggtagac aatacactga tgacaaacaa caagtgtttt gagcaatgtg
2901 gggctgcagg ttgtggttgc ttcaatgtga atccatcttg tctttttgtt
2951 cactcttatt tgatgccaac aagatcagaa gcagtcaaag tttttgagtg
3001 tgtctcatgg tcccacaggt taaccctaaa agtatctgga ccaaaaataa
3051 ataccagaag aatcactctg tcagcactaa gcactcaaat agctgagtgg
3101 ggtagtataa ctttaaacat tgactccgag gctatgaact taggtaatcc
3151 agtctccttc atgagaacat ccagtggtgc catggccctg attgatgacc
3201 cattcagcag gatcccgaga aagggctatc ttggagaggt caggtgctca
3251 tctgaagccc acgcatccag aggagacaga tcatgtctgc gtgctcctga
3301 cttgatcaaa tacaggccac agttagatat agtggaatgc acctctgctt
3351 tagtcgaccc ctatgcaata ctgatgcgca gttcccttcc ccaaaagaga
3401 ggaaactaca tattcacccc atctatggat ggtcacaatg tgcaggcaat
3451 gacatcaggg agtataaatg cagaattttc tctgttgctt gacaattatg
3501 aggttgagtt ccaggccagc tcaactacat gtaatgctgc atttgttaac
3551 attactgggt gctactcttg taatgaaggt tctgaagtct gtgtcaaagt
3601 agttgcttct gcagatgggt cattcttcgc tataagtgaa gagtcaggac
3651 aagcaatcca attcccaatt acaagggggg acaattacag atgccggata
3701 cttcactttt caagaccaga agtagaagaa cagttttcat attcttgtgg
3751 aggtgataaa aaaccattga tagttagagg caccttaata gctgttggcc
3801 cacatgatga ccgggtgctg ggaggcaaat ctatagtagt gaatccaaag
3851 aagggaacat ggagcatagg tggctgggca tcaggcttga tgtcctggct
3901 gggtggtccc ttgaaaacat ttggaatgat tcttggttac atcttgctat
3951 caatactgat tatcattgtg ctatggttgc tgttcaagac tctggttgct
4001 cggtctatag cagccaggca gaagatgatg taa