Sequence of DPV Salehabad virus

Salehabad virus strain I-81 nucleoprotein gene, complete cds; and nonstructural protein gene, partial cds.

ACC No: JX472405

Dated: 2012-12-20 | Length: 1765 | CRC: 846045759

                
ID   JX472405; SV 1; linear; genomic RNA; STD; VRL; 1765 BP.
XX
AC   JX472405;
XX
DT   20-DEC-2012 (Rel. 115, Created)
DT   20-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Salehabad virus strain I-81 nucleoprotein gene, complete cds; and
DE   nonstructural protein gene, partial cds.
XX
KW   .
XX
OS   Salehabad virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-1765
RX   PUBMED; 23239568.
RA   Palacios G., Savji N., Travassos da Rosa A., Desai A., Sanchez-Seco M.P.,
RA   Guzman H., Lipkin W.I., Tesh R.;
RT   "Characterization of the Salehabad virus species complex of the genus
RT   Phlebovirus (Bunyaviridae)";
RL   J. Gen. Virol. 0:0-0(2012).
XX
RN   [2]
RP   1-1765
RA   Palacios G., Savji N., Lipkin W.I.;
RT   ;
RL   Submitted (09-AUG-2012) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 W 168th Street,
RL   17th Floor, New York, NY 10032, USA
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Geneious v. 4.5
CC   Sequencing Technology :: Sanger dideoxy sequencing; 454
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1765
FT                   /organism="Salehabad virus"
FT                   /segment="S"
FT                   /host="Phlebotomus sp."
FT                   /strain="I-81"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /collection_date="1959"
FT                   /db_xref="taxon:904699"
FT   CDS             37. .783
FT                   /codon_start=1
FT                   /product="nucleoprotein"
FT                   /protein_id="AGA82743.1"
FT                   /translation="MSGQEEFAKIAVEFANEAVDTAAILEIVKEFAYQGYDAARVVELV
FT                   REKGGDTWRNDVKTLIIIALTRGNKPTKILEKMSPAGKSKFRALVLKYSLKSGNPGRDD
FT                   LTLARIASAFAAWTIQAIKVVEQYLPVTGAAMDELSSSYPRPMMHPCFGGLIDNTLPEE
FT                   TVAALVRAHSLFLDTFSRTINPAMRTKTKAEVLKSFEQPLNAAINSRFLTSEAKRKILK
FT                   SAGVIDTNLKPSPAVKQAADKFSETA"
FT   CDS             complement(906. .>1765)
FT                   /codon_start=3
FT                   /product="nonstructural protein"
FT                   /protein_id="AGA82744.1"
FT                   /translation="TKTPYCFIQTITMSLHYLCDRITPTYDYPCLGEVMVSFEAVNKEV
FT                   GGPVCVYDDLEFELFESRQSLSYRNTLYDFIDSGELPWRWGPHMWGSRVTLDELPLLDS
FT                   LMKTFQGLPVSDLMDSRLHYTRNSLIWPTGHVSLKAFRILYPCIFVSFSYSRRELAEYI
FT                   FEVTKAPHLEKGIVDMAGRIRSMAHSLGIQENLVPCKDMMKSICILQFFRMIRGFQRDR
FT                   TRSVLFGGTVIPFFQACIDALTRDFPGLLDVWSPGADIFDAITPSPCDSGVSTDSEFDS
FT                   DIEV"
XX
SQ   Sequence 1765 BP; 502 A; 401 C; 420 G; 442 T; 0 other;

jx472405 Length: 1765  20-DEC-2012  Type: N  Check: 7890  ..

       1  acacaaagaa ccctactttt cgctaaagct aacaccatgt ctggacagga
      51  ggaatttgca aagattgcag ttgaattcgc caatgaagca gttgacaccg
     101  ctgcgatact tgaaatcgtc aaggagttcg cataccaagg ttatgatgct
     151  gctagagttg tcgagctggt tcgggagaag ggaggagaca catggaggaa
     201  tgatgtgaag actctgatca ttattgctct cactcgagga aataagccaa
     251  ccaaaatcct tgagaagatg tctcctgcag ggaagtcgaa atttagggct
     301  cttgtgctga agtacagcct taaaagtgga aatcctggtc gtgatgatct
     351  gaccctagcg aggattgcct ctgcatttgc agcatggact atccaggcta
     401  tcaaggtggt tgagcaatac cttccggtca ctggggctgc aatggatgag
     451  ctgtcttcaa gctacccaag acctatgatg cacccatgct tcggaggctt
     501  aattgataac actctaccag aagagactgt ggccgccctt gtgagagctc
     551  acagtttgtt cttagatacc ttctcaagga ctatcaaccc tgctatgagg
     601  accaagacta aggctgaggt tctcaagagt tttgagcagc ctctcaatgc
     651  cgccatcaat agcaggttct tgacaagtga ggccaagagg aagatcttaa
     701  agagtgctgg agtaattgat accaacctta agccatctcc agctgtcaag
     751  caggccgctg acaaattctc tgagacagca taagctgcca tgggtgggga
     801  gtaagggatt tctaaattgg gttctctaat tggcttaatt attttagatt
     851  tggacactaa attgggatgg gattaattgg ctatctaaaa cacaccacgg
     901  gcagcttaca cctctatgtc cgaatcaaat tcagaatcag ttgacactcc
     951  tgagtcacat gggctaggtg ttatagcgtc aaaaatgtct gcaccagggc
    1001  tccacacatc tagcaagcct gggaagtctc tagttaaggc gtcaatacag
    1051  gcttggaaga aaggaatcac agttccgccg aagagcactg acctggtcct
    1101  gtccctctga aaccctctaa tcatcctgaa aaactgaaga atgcaaatgc
    1151  ttttcatcat gtccttgcag ggaaccaaat tctcctgtat gccaagagag
    1201  tgggccattg acctaattct tcctgccatg tctacaatac ctttctctag
    1251  gtgaggtgcc ttggtgactt cgaatatgta ctcagctagc tcacgcctag
    1301  agtaactaaa agacacaaaa atacatgggt acaggatccg gaatgctttc
    1351  aatgacacat gaccagttgg ccagatcagg gaatttctgg tatagtgcaa
    1401  gcgagagtcc ataagatctg atactggtaa tccctggaaa gtcttcatta
    1451  aagagtccaa cagcgggagt tcatctaatg tcacccttga accccacatg
    1501  tgcggacccc atctccaagg tagctcgcca gagtcaatga agtcatagag
    1551  ggtgtttctg taagacaggc tctgccttga ctcaaatagc tcgaactcta
    1601  aatcgtcata gacgcacaca ggaccaccca cttctttatt aacagcctcg
    1651  aagctcacca ttacctcacc tagacaggga tagtcatagg ttggtgtaat
    1701  acggtcacac aggtagtgga gagacatcgt gatagtttgt atgaagcagt
    1751  agggggtctt tgtgt