Sequence of DPV Plum pox virus

Plum pox virus isolate Kp8-1U polyprotein gene, partial cds.

ACC No: JX472433

Dated: 2013-06-04 | Length: 996 | CRC: 326731773

                
ID   JX472433; SV 1; linear; genomic RNA; STD; VRL; 996 BP.
XX
AC   JX472433;
XX
DT   07-OCT-2012 (Rel. 114, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 2)
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DE   Plum pox virus isolate Kp8-1U polyprotein gene, partial cds.
XX
KW   .
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OS   Plum pox virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-996
RX   PUBMED; 23404462.
RA   Chirkov S., Ivanov P., Sheveleva A.;
RT   "Detection and partial molecular characterization of atypical plum pox
RT   virus isolates from naturally infected sour cherry";
RL   Arch. Virol. 158(6):1383-1387(2013).
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RN   [2]
RP   1-996
RA   Chirkov S.N., Sheveleva A.A.;
RT   ;
RL   Submitted (08-AUG-2012) to the INSDC.
RL   Virology, Lomonosov Moscow State University, Leninskie Gory 1-12, Moscow,
RL   Moscow 119991, Russia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .996
FT                   /organism="Plum pox virus"
FT                   /host="sour cherry"
FT                   /isolate="Kp8-1U"
FT                   /mol_type="genomic RNA"
FT                   /country="Russia"
FT                   /collected_by="S. Chirkov"
FT                   /collection_date="May-2012"
FT                   /db_xref="taxon:12211"
FT   CDS             <1. .>996
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="coat protein"
FT                   /db_xref="GOA:K0FAI8"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:K0FAI8"
FT                   /protein_id="AFU11116.1"
FT                   /translation="ANEGGDDDVTLVDAGKSTVTTAATTPITTSAQLPPPVFPQLRSTT
FT                   PMFEPIFTPATTQPTIKPVTPSMTSPFSYGVIGNQNVAPSSSNALANTRKERDVDAGTV
FT                   GTFSVPRLKAMTSKLSLPKVRGKAIMNLNHLAHYNPAQVDLSNTRAPQSCFQSWYEGVK
FT                   RDYDVSDDEMSIILNGLMVWCIENGTSPNINGMWVMMDGETQVEYPIKPLLDHAKPTFR
FT                   QIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNLTDYSLARYAFDFYEMTSTTPVRAREA
FT                   HIQMKAAALRNTQNRLFGLDGNVGTQEEDTERHTAGDVNRNMHNLLGVRGV"
XX
SQ   Sequence 996 BP; 303 A; 226 C; 238 G; 229 T; 0 other;

jx472433 Length: 996  04-JUN-2013  Type: N  Check: 5518  ..

       1  gcaaatgaag gcggtgacga tgatgtgacg ttagtggacg caggtaaatc
      51  cactgtcacc acagcagcaa ctacaccaat cacaacaagc gcacagctgc
     101  cgcctccggt gttcccacaa ttgcgaagca cgacaccaat gttcgaaccc
     151  attttcactc cagcaaccac tcagccgact ataaaaccag ttacaccatc
     201  aatgacaagt ccattctctt atggagtgat tgggaatcag aatgtggcac
     251  cttcatcttc aaatgcgctg gctaatacga ggaaggaacg agacgttgat
     301  gcaggaacag tcggaacttt ttcagtgcct cggctgaagg ctatgacttc
     351  gaagttgtct ctcccgaaag tgagaggaaa ggccattatg aacctcaatc
     401  atctggctca ttacaatcct gcgcaagttg acctgtctaa cacacgagct
     451  ccacaatcct gtttccaatc ttggtatgaa ggagttaagc gtgattatga
     501  tgtttcagat gatgaaatga gcattattct taatgggctc atggtctggt
     551  gcattgagaa tggaacttcc ccaaacatca acggaatgtg ggtcatgatg
     601  gatggggaga cacaagtgga gtatccaata aagccattgt tggatcatgc
     651  gaaacccact tttagacaaa ttatggcaca tttcagtaac gttgctgaag
     701  cgtatattga aaaacggaat tatgagaaag catacatgcc aaggtatgga
     751  attcagcgca acctgacaga ttacagcctc gccagatacg cctttgattt
     801  ttatgagatg acctcgacaa cgcccgtaag ggcacgagag gcacacattc
     851  aaatgaaggc agcagcattg agaaacactc agaatcgttt atttggcttg
     901  gatggaaacg ttggaacaca agaagaggac acagagaggc acaccgctgg
     951  tgatgttaat cgcaacatgc acaacctcct cggtgtgagg ggagtg