Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate GFV 1050-02 segment RNA2 polyprotein gene, complete cds.
ACC No: JX513890
Dated: 2012-10-28 | Length: 3760 | CRC: -1553753873
ID JX513890; SV 1; linear; genomic RNA; STD; VRL; 3760 BP.
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AC JX513890;
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DT 28-OCT-2012 (Rel. 114, Created)
DT 28-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Grapevine fanleaf virus isolate GFV 1050-02 segment RNA2 polyprotein gene,
DE complete cds.
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KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN [1]
RP 1-3760
RA Rott M.E., Belton M., Saeed H.;
RT "Detection of grapevine and tree fruit viruses by next generation
RT sequencing";
RL Unpublished.
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RN [2]
RP 1-3760
RA Rott M.E., Belton M., Saeed H.;
RT ;
RL Submitted (21-AUG-2012) to the INSDC.
RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney
RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3,
RL Canada
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CC ##Assembly-Data-START##
CC Assembly Method :: CLCBio Genomic Workbench v. 4.5
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .3760
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera"
FT /isolate="GFV 1050-02"
FT /mol_type="genomic RNA"
FT /country="Canada"
FT /collection_date="Sep-2010"
FT /db_xref="taxon:12274"
FT 5'UTR <1. .225
FT variation 198
FT /replace="g"
FT CDS 226. .3549
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains homing protein (2A), movement protein (2B)
FT and coat protein (2C)"
FT /protein_id="AFV34732.1"
FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVESWLAAINSDPSFRQTVKE
FT DVQENRTEPSAIRMFSWKIGSGPIDNPDMLDWQFVLTGKVSRQPTGPAKAQEVVVPPVK
FT VIPSPPPVPGPYFRPIGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQGAP
FT LKLSLAMKFAMLKHTTWRKWYDASDERLLEAHPGGPCLPPPPPIQSPPSFCERVREFCR
FT MKSCARVFALETSSGLNKAWIGSINIPSTSVCCADGRTTGGQTIAQEADPLQHRVSTSV
FT APGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPPL
FT RSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAVV
FT IDALEIAINPFGMPGNPTDLTVVATYGHERNMTRAFIGSASTFLGNGLARAIFFPGLQY
FT SQEEPRRESIVRLYVASTNATVDADSILAAISVGTLRQHVGSMHYRTVANTVHQAQVQG
FT TTLRATMMGNTVVVSPEGSLVTGIPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIRS
FT RSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMILDF
FT KGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITGRIAASADPIYTLS
FT VPHWLIHHKLGTFTCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAVV
FT ELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVPM
FT VGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIVLWVVSEWNGTTMDWNELFKY
FT PGVYVEEDGSFEVKIRSPYHRTPAKLLAGQSQRDMSSLNFYAIAGPIAPSGETARLPIV
FT VQIDEIVRPDFSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGENPF
FT AAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTVTKLVGDKAMGLDGPSQIFAIQKLE
FT GVTDLLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFPV
FT "
FT variation 276
FT /replace="a"
FT variation 1008
FT /replace="t"
FT variation 1488
FT /replace="t"
FT variation 1593
FT /replace="a"
FT variation 1758
FT /replace="c"
FT variation 2184
FT /replace="t"
FT variation 2217
FT /replace="t"
FT variation 2277
FT /replace="c"
FT variation 2430
FT /replace="c"
FT variation 2757
FT /replace="a"
FT variation 2973
FT /replace="g"
FT variation 3033
FT /replace="c"
FT 3'UTR 3550. .3760
FT variation 3582
FT /replace="a"
FT variation 3629
FT /replace="a"
FT variation 3641
FT /replace="g"
FT variation 3644
FT /replace="t"
FT variation 3677
FT /replace="t"
FT variation 3709
FT /replace="t"
FT variation 3710
FT /replace="c"
FT variation 3719
FT /replace="g"
XX
SQ Sequence 3760 BP; 905 A; 785 C; 957 G; 1113 T; 0 other;
jx513890 Length: 3760 28-OCT-2012 Type: N Check: 7684 ..
1 aaaattctta cggtttctta cgttaccgtg aagttacttt cctcaagcca
51 agagtttaag aaactcaaaa gaaacactgc gaagagttta agaaactcac
101 aaagcgaaga gtttaagaaa ctcatcattg ctttttctgc ttttcacctt
151 gcgctttatt tgtttagtat tttgttaagt tgttttaaaa agcttttatt
201 ttgtttttct ttcttttctg cccgtatggg caagttctat tattccaaca
251 ggcgtttagc ctgttgggct gctggtaaga accctcattt ggggggttct
301 gttgaatcat ggctggcggc cataaattct gatccctcct tccgccaaac
351 tgttaaggag gatgtccagg aaaaccggac tgagccttcg gccatccgga
401 tgttttcctg gaaaattggg tcagggccca ttgacaaccc tgatatgctt
451 gattggcagt ttgtccttac gggcaaggtg tccaggcagc cgaccgggcc
501 ggctaaagcc caagaggtgg tggtgccacc tgtgaaggtt attccttcac
551 cgccccctgt tccagggcct tattttaggc ctattggggc ttttgcacca
601 acccggtccg ggtttattcg ggccactgtg gaaagactca cccgggaacg
651 ggaagagtcg agagctgcgg cactctttgc cgaattgcca ttggagtatc
701 ctcagggtgc tcctttgaag ttgagcctgg cgatgaaatt cgccatgctc
751 aaacatacca cttggaggaa gtggtatgat gccagtgatg agcgcctctt
801 ggaggctcat cctggcggtc cttgtcttcc tcctcctccc ccaatccaaa
851 gtccgccctc tttttgtgag agggtgaggg agttttgcag gatgaagtcc
901 tgcgccaggg tttttgcctt ggaaacctct tcaggtctga ataaggcctg
951 gataggttca ataaacatcc ccagcacttc tgtgtgctgt gcggatggaa
1001 ggactaccgg tgggcaaaca attgctcaag aagctgatcc tttgcaacat
1051 agggtcagta cttctgtagc ccccggtagg gcacaatgga tctctgagcg
1101 caggcaagct ctgcgaagga gagagcaagc aaatagcttg cagggtcttg
1151 ctgctcaaac tgacatgact tttgagcagg ccaggaatgc ttatcttggt
1201 gctgctgata tgattgagca aggcctgccg ctgcttcccc ctctgcgcag
1251 cgcttatgcc cctaggggct tgtggagggg accctcaacc agagccaatt
1301 atacattaga ttttaggctc aatggtattc cgactgggac aaacacattg
1351 gaaatattgt ataatcctgt gtcggaagaa gagatggaag aataccggga
1401 taggggtatg tcagccgtgg tgatcgatgc gctagaaata gccataaatc
1451 cgtttggcat gcccgggaat ccaacggatt tgaccgtcgt agcaacatat
1501 gggcatgagc gcaatatgac acgtgccttt attggatctg cttccacgtt
1551 cttagggaat gggttagcta gagccatttt ttttcctggc ttgcaatata
1601 gtcaggaaga accaaggcgc gaatctatag ttcgcctata tgttgcttcc
1651 actaatgcca ctgtagacgc tgattcgatc ttggcagcca ttagtgttgg
1701 cactttgcgc caacacgttg gttccatgca ctatcgtaca gtggctaata
1751 ccgtgcatca agcccaggtg caaggaacga cactcagggc tactatgatg
1801 ggtaatactg ttgtagtgtc acctgaagga agcctggtta ctgggatccc
1851 cgaggctaga gtcgaaatag ggggtggttc tagtatcaga atggtggggc
1901 ctctgcaatg ggagagtgta gaggaaccag ggcaaacctt ctctatcaga
1951 agtcgttcac gatctgtgag gattgataga aatgttgatc ttcctcaact
2001 tgaggctgag cccagattga gctcaaccgt gagaggatta gctggtagag
2051 gagtggttta tattcccaag gattgccagg caaataggta cttgggcacc
2101 ctgaacatac gtgatatgat tttagatttc aagggtgtcc agtatgaaaa
2151 gtggataact gcaggattag tcatgcctac tttcaagata gttgttaggc
2201 tacctgcaaa tgctttcact ggattgacgt gggtgatgag ctttgatgct
2251 tataaccgga taactggtag aattgctgct agtgcagatc ccatatatac
2301 cctgtcagtc ccacattggc ttatccacca caagttgggt acgtttacat
2351 gtgaaataga ctatggagaa ttgtgtggcc atgccatgtg gtttaagtcc
2401 acaacatttg aatctccaag actacatttt acgtgcttaa cgggcaacaa
2451 caaagagctg gcggcagact ggcaagctgt cgttgagctg tatgccgaat
2501 tggaagaggc tacctctttt cttgggaaac caactctggt ctttgacccg
2551 ggtgtttttg atggtaaatt ccaatttctt acttgccctc ccatattctt
2601 tgatctaaca gccgtcacgg ctcttaagag tgctgggctg acattaggac
2651 aagtcccaat ggttggcact accaaggttt ataacctaaa cagtactctt
2701 gtgagttgtg ttttgggtat gggaggtact attagaggaa gggtacatat
2751 ctgcgcgcca atcttctata gtattgtctt atgggttgtt agtgagtgga
2801 acgggaccac tatggattgg aatgaacttt tcaaatatcc cggggtgtat
2851 gtggaagaag atgggagttt tgaagtcaag attcgctctc catatcaccg
2901 aacacctgct aaattgcttg ctggtcaaag tcagagggac atgagttctc
2951 taaatttcta cgcaatagca ggacccatcg ctccatcggg tgaaaccgca
3001 cgacttccta tcgttgtaca aattgacgag attgtgcgcc cagatttctc
3051 tttaccaagt tttgaagatg attactttgt gtgggtggat ttttctgagt
3101 tcactctcga taaggaagaa attgagatcg gttctcgttt cttcgatttc
3151 acttcaagta cttgtagagt gtctatggga gaaaacccgt tcgctgcaat
3201 gattgcttgt catggattgc atagtggtgt tttggacctc aagctccaat
3251 ggagtctgaa taccgagttt ggcaagagca gtgggagcgt tactgttacg
3301 aagctggtgg gtgataaagc catgggtctg gacggacctt ctcagatttt
3351 tgccatacaa aagctggaag gagttacaga tttgttgatt gggaattttg
3401 caggagcaaa tcccaactca catttctctc tctatagccg atggatggca
3451 attaaattgg accaagcaaa gagtattaaa gtactccgtg tcttgtgcaa
3501 gcctcgtcca ggtttcagtt tttatggaag gaccagcttc cccgtctagg
3551 atgtttaatt ttagataatt taggtatatg cgtgtgtttt attaactgtg
3601 tgtattattt tgtgttgtag tttgctttga cttgtttact actgtagtgt
3651 gtttattttc atgcttttag tggcgacagt gtgttgtttg tcctttggac
3701 acacttgcct tgttggacac aaaaagattt tcttttcttt ttactgtttt
3751 gcaaattttt