Sequence of DPV Grapevine fanleaf virus
Grapevine fanleaf virus isolate GFV 3138-01 segment RNA2 polyprotein gene, complete cds.
ACC No: JX513895
Dated: 2012-10-28 | Length: 3761 | CRC: -554020908
ID JX513895; SV 1; linear; genomic RNA; STD; VRL; 3761 BP.
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AC JX513895;
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DT 28-OCT-2012 (Rel. 114, Created)
DT 28-OCT-2012 (Rel. 114, Last updated, Version 1)
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DE Grapevine fanleaf virus isolate GFV 3138-01 segment RNA2 polyprotein gene,
DE complete cds.
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KW .
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OS Grapevine fanleaf virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales;
OC Secoviridae; Comovirinae; Nepovirus; Subgroup A.
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RN [1]
RP 1-3761
RA Rott M.E., Belton M., Saeed H.;
RT "Detection of grapevine and tree fruit viruses by next generation
RT sequencing";
RL Unpublished.
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RN [2]
RP 1-3761
RA Rott M.E., Belton M.;
RT ;
RL Submitted (21-AUG-2012) to the INSDC.
RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney
RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3,
RL Canada
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CC ##Assembly-Data-START##
CC Assembly Method :: CLCBio Genomic Workbench v. 4.5
CC Sequencing Technology :: Illumina
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .3761
FT /organism="Grapevine fanleaf virus"
FT /segment="RNA2"
FT /host="Vitis vinifera"
FT /isolate="GFV 3138-01"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Sep-2010"
FT /db_xref="taxon:12274"
FT CDS 400. .3549
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains conserved NeA_P2 and nepovirus coat protein
FT domains"
FT /protein_id="AFV34756.1"
FT /translation="MFSYKIGSGPIDNPDMLDWQFVLTGKVSRRPPQPVKADEVVVVPH
FT PVIPSPPPVPGPYFRPVGAFAPTRSGFIRATVERLSREREESRAAALFAELPLEYPQGA
FT PLKLSLAMKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQSPPSFHERVREFC
FT RMKSCARVFALETSSGLNKAWIGSINIPNTSVCCADGRTTGGQTIAQEADPLQHRVSTS
FT VAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPP
FT LRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGINTLEILYNPVSEEEMEEYRDRGMSAV
FT VIDALEIAINPFGMPGNPTDLTVVATYGHERNMSRAFIGSASTFLGNGLARAIFFPGLQ
FT YSQEEPRRESIVRLYVASTNATVDADSILAAISVGTLRQHVGSMHYRTVASTVHQAQVQ
FT GTTLRATMMGNTVVVSPEGSLVTGIPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIR
FT SRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMISD
FT FKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTL
FT SVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAV
FT VELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVP
FT MVGTTKVYNLNSTLVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTMDWNELFK
FT YPGVYVEEDGSFEVKIRSPYHRTPAKLLAGQSQRDMSSLNFYAIAGPIAPSGETARLPI
FT VVQIDEIVRPDLSIPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGENP
FT LAAMIACHGLHSGVLDLKFQWSLNTEFGKSSGSVIVTKLVGDKAMGLDGPSQIFAIQKL
FT EGVTDLLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFP
FT V"
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SQ Sequence 3761 BP; 891 A; 787 C; 954 G; 1129 T; 0 other;
jx513895 Length: 3761 28-OCT-2012 Type: N Check: 1136 ..
1 aaaattctta cggtttctta cgttaccgtg atttcacttt ttccctgcca
51 agagtttaag aaactcaaaa gaaacactgc gaagagttta agaaactcac
101 aaagcgaaga gtttaagaaa ctcatcattg ctttttctgc ttttcacctt
151 gcgctttatt tgtttagcat tttatttagt tcttttaaaa agcttttgtt
201 ttgtttttct ttcttttctg cccgtatggg caagttctat tattccaaca
251 ggcgtttagc ctgttgggct gctggtaaga accctcattt ggggggttct
301 gttgaataat ggctggcggc cattaatact gatccctcct tccgccaaac
351 tgttaaggag gatgtccagg aaaaccggac tgagccttcg gccatccgga
401 tgttttccta caaaattggg tcagggccca ttgacaaccc tgatatgctt
451 gattggcagt ttgtccttac gggcaaggtg tccaggcggc cgccccagcc
501 ggttaaagct gatgaggttg tggtggtgcc acacccggtt attccttcac
551 cgccccctgt tccagggcct tattttaggc ctgttggggc ttttgcacca
601 acccggtccg ggtttattcg ggccactgtg gaaaggctct cccgtgaaag
651 ggaagagtcg agagctgcgg cactctttgc cgaattgcca ttggagtatc
701 cacaaggtgc tcctttgaag ttgagcctgg cgatgaaatt tgccatgctc
751 aagcatacca cttggaggaa gtggtatgac actagtgatg agcgcctttt
801 ggaggctcat cctggtggtc cttgtcttcc tccccctccc ccaatccaaa
851 gccccccctc ttttcatgag agggtgaggg agttttgcag gatgaagtcc
901 tgcgccaggg tttttgcctt ggaaacctct tcaggtctga ataaggcctg
951 gataggttca ataaacatcc ccaacacttc tgtgtgttgt gcggatggga
1001 ggactaccgg tgggcaaaca attgctcaag aagctgatcc tttgcaacat
1051 agggtcagta cttctgtagc ccccggtagg gcacaatgga tctctgagcg
1101 caggcaagct ctgcgaagga gagagcaagc aaatagcttg cagggtcttg
1151 ctgctcaaac tgatatgact tttgagcagg ccaggaatgc ttatcttggt
1201 gctgctgaca tgattgagca aggcctaccg ttacttcctc ctctgcgcaa
1251 tgcttatgcc cctaggggtt tgtggagggg gccctcaacc agagccaatt
1301 acacgttaga ttttaggctc aatggtattc cgactgggat aaatacactg
1351 gaaatattgt ataatcccgt gtcggaagaa gagatggaag agtaccggga
1401 tagaggcatg tcggctgtgg tgatcgatgc gctagaaata gccataaatc
1451 cgttcggtat gcccggtaat ccgacggact taactgtcgt agcaacgtac
1501 gggcatgagc gtaacatgtc acgtgccttt attggttctg cctctacctt
1551 tcttggaaat ggtttggcac gagccatctt ctttcctggt ttgcaataca
1601 gtcaggaaga accgaggcgc gagtctatag ttcgcctata tgttgcttcc
1651 actaatgcca ctgtagacgc tgattcgatc ttggcagcca ttagtgttgg
1701 cactttgcgt caacatgttg gttccatgca ttatcggaca gtggcaagca
1751 ctgtgcacca ggcccaggtg caaggaacga cgctcagggc tactatgatg
1801 ggcaataccg ttgtagtttc acctgaagga agcctggtta ctgggatccc
1851 cgaggctaga gttgaaatag ggggtggttc tagtatcaga atggtgggac
1901 ctctgcaatg ggaaagtgtg gaggagccag ggcaaacctt ctctatcaga
1951 agtcgctcac ggtctgtgag gattgacaga aatgttgatc ttcctcagct
2001 tgaggctgag cctaggttga gctcaaccgt gagaggatta gctggaagag
2051 gcgtggttta tattcccaag gattgccagg caaacaggta cttgggcacc
2101 ctgaacatac gggatatgat ttcagatttt aagggtgtcc agtatgaaaa
2151 gtggataact gcaggattag tcatgcctac tttcaagata gttgttaggc
2201 tacctgcaaa tgccttcact ggactgacgt gggtgatgag ctttgatgct
2251 tataaccgga taactagtag aattactgct agtgcggatc ctgtatacac
2301 cctgtcagtc ccacattggc ttatccatca taagttgggc acgttttcat
2351 gtgaaataga ttatggagag ttgtgtggcc atgctatgtg gtttaagtcc
2401 acaacatttg aatctccaag gttacatttc acatgcttaa cggggaacaa
2451 caaagagttg gcggcagact ggcaagctgt cgttgaacta tatgctgaat
2501 tggaagaggc cacttctttt cttgggaaac caactctggt ttttgaccca
2551 ggtgttttca atggcaaatt tcagtttctt acttgccctc ccatattctt
2601 tgatctaaca gccgtcactg ctctcaagag tgctgggttg actttgggac
2651 aagtcccaat ggttggcact accaaggttt ataacctaaa cagtactctt
2701 gtgagttgtg ttctgggtat ggggggtact attagaggaa aggttcacat
2751 ttgcgcacca atcttctata gtattgtttt atgggttgtt agtgagtgga
2801 acgggaccac tatggattgg aatgaacttt tcaaatatcc cggggtgtat
2851 gtggaagaag atgggagttt tgaagtcaag attcgctctc catatcaccg
2901 aacacctgct aaattgcttg ctggtcaaag tcagagggac atgagctctc
2951 taaattttta tgcaatagca ggacccatcg ctccatcggg tgagaccgca
3001 cgacttccta tcgttgtaca aattgacgag attgtgcgcc ctgatctctc
3051 tataccgagc tttgaagatg attattttgt gtgggtggat ttttctgagt
3101 tcactctcga taaagaagaa attgagattg gttctcgttt cttcgatttt
3151 acttcaagca cctgtagagt gtctatggga gaaaacccgc tcgctgcaat
3201 gattgcttgt catggattgc atagtggtgt tttagacctc aaatttcaat
3251 ggagtctgaa cactgaattt ggcaagagca gtgggagcgt tattgttaca
3301 aagctggttg gtgataaagc catgggtctg gacggacctt ctcagatttt
3351 tgccatacaa aagctggaag gagttacaga tttgttgatt gggaattttg
3401 caggagcaaa tcccaactca catttctctc tctatagccg gtggatggca
3451 attaaactag atcaagcaaa gagtattaag gtactccggg tcttgtgcaa
3501 gcctcgtcca ggtttcagtt tttatggaag gaccagcttc cccgtctagg
3551 atgtttaatt ttagataatt taggtatatg cgtgtgtttt attaactgtg
3601 tgtattattt tgtgttgtag tttgctttga cttgtttact actgtagtgt
3651 gtttattttc atgcttttag tggcgacagt gtgttgtttg tcctttggac
3701 acacttgcct tgtcggacgc aaaaagattt tcttttcttt ttactgtttt
3751 gcaaattttt a