Sequence of DPV Groundnut bud necrosis virus

Groundnut bud necrosis virus isolate GBNV-[Tom_Coi] nonstructural movement protein (NSm) gene, complete cds.

ACC No: JX535593

Dated: 2012-11-05 | Length: 924 | CRC: 1381449609

                
ID   JX535593; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
XX
AC   JX535593;
XX
DT   05-NOV-2012 (Rel. 114, Created)
DT   05-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Groundnut bud necrosis virus isolate GBNV-[Tom_Coi] nonstructural movement
DE   protein (NSm) gene, complete cds.
XX
KW   .
XX
OS   Groundnut bud necrosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-924
RA   Akram M.;
RT   "Sequence diversity of GBNV isolates associated with fabaceous and
RT   solanaceous crops";
RL   Unpublished.
XX
RN   [2]
RP   1-924
RA   Akram M.;
RT   ;
RL   Submitted (28-AUG-2012) to the INSDC.
RL   Division of Crop Protection, Indian Institute of Pulses Research,
RL   Kalyanpur, Kanpur, UP 208024, India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Groundnut bud necrosis virus"
FT                   /segment="M"
FT                   /host="Lycopersicon esculentum"
FT                   /isolate="GBNV-[Tom_Coi]"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Coimbatore, TN"
FT                   /isolation_source="leaves and fruits"
FT                   /collection_date="Jan-2011"
FT                   /note="serogroup: IV"
FT                   /db_xref="taxon:198612"
FT   gene            1. .924
FT                   /gene="NSm"
FT   CDS             1. .924
FT                   /codon_start=1
FT                   /gene="NSm"
FT                   /product="nonstructural movement protein"
FT                   /protein_id="AFV66748.1"
FT                   /translation="MSRLSNVLESFRPSNSSNKELVPAVKKENNRSILARNVSKKDVDS
FT                   AIMNKAKTLNGKQYVSSGGPSVLGTYSSESAVEATSDDILSRLVVEQSTHLSNWKNDSL
FT                   VGNGNDKVSFTISIMPTWNSNRKYMHISRLIIWVVPTIPDSKNNVKASLIDPNKMTKEE
FT                   KIIISRQASLKDPMCFIFHLNWSFPKERNTPKQCMQLNLTSDEKYAKGVSFASVMYSWV
FT                   KNFCDTPIAAENNTCDVVPINRAKVIQSAALIEACKLMIPKGTGGKQISNQIKSLQKAA
FT                   ERLALEAENDDESLDVDIEMDNLLEI"
XX
SQ   Sequence 924 BP; 326 A; 165 C; 184 G; 249 T; 0 other;

jx535593 Length: 924  05-NOV-2012  Type: N  Check: 7175  ..

       1  atgtctcgct tgtctaacgt cttagaatct ttccgtcctt caaacagctc
      51  aaacaaagag ctagtgcctg cagttaaaaa ggaaaacaac agaagcattt
     101  tggcaagaaa tgtttccaaa aaagatgttg acagtgccat catgaacaaa
     151  gcaaaaacat tgaatgggaa acagtatgtt tctagtggag gtcccagtgt
     201  actgggcaca tactctagtg agtcagctgt ggaagctact tctgatgata
     251  ttctgtccag gcttgttgtt gagcaaagta ctcatctgag taactggaaa
     301  aatgattcac ttgtaggcaa tggaaatgac aaagttagct ttaccataag
     351  cataatgcct acatggaaca gtaacaggaa gtatatgcat atatcaaggc
     401  ttataatctg ggttgtgcca actatccctg attcaaaaaa caatgtcaaa
     451  gcctccttaa ttgatccaaa caaaatgact aaagaggaga agataattat
     501  cagcagacaa gcctcattaa aggatcctat gtgttttatt ttccatctaa
     551  attggtcatt cccaaaagag agaaatactc caaaacaatg catgcagctc
     601  aacttaacca gtgatgaaaa atatgccaaa ggagtcagct ttgcttcagt
     651  catgtattca tgggttaaga acttctgcga tactcctata gctgctgaaa
     701  ataacacatg tgatgtagtt cccattaata gagctaaggt cattcaatct
     751  gctgctctaa ttgaagcatg caaattaatg atacctaaag gaactggtgg
     801  gaaacagata tccaatcaaa tcaagagttt acagaaagct gctgaaaggt
     851  tagcattaga agctgaaaat gatgatgaga gcctggatgt cgatattgag
     901  atggataatc ttcttgaaat ataa