Sequence of DPV Spider lily necrotic spot virus
Spider lily necrotic spot virus isolate HLS1-2 segment S, complete sequence.
ACC No: JX833564
Dated: 2012-11-26 | Length: 2724 | CRC: 34892122
ID JX833564; SV 1; linear; genomic RNA; STD; VRL; 2724 BP.
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AC JX833564;
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DT 26-NOV-2012 (Rel. 114, Created)
DT 26-NOV-2012 (Rel. 114, Last updated, Version 1)
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DE Spider lily necrotic spot virus isolate HLS1-2 segment S, complete
DE sequence.
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KW .
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OS Spider lily necrotic spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2724
RA Xu Y., Liu Y.T., Wang W.C., Lou S.G.;
RT "A novel tospovirus cause necrosis on spider lily in southwest of China";
RL Unpublished.
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RN [2]
RP 1-2724
RA Xu Y., Liu Y.T., Wang W.C., Lou S.G.;
RT ;
RL Submitted (15-SEP-2012) to the INSDC.
RL College of Agronomy and Biotechnology, Yunnan Agricultural University,
RL Jinhei Road, Kunming, Yunnan 650201, China
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2724
FT /organism="Spider lily necrotic spot virus"
FT /segment="S"
FT /host="Hymenocallis littoralis"
FT /isolate="HLS1-2"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="18-Oct-2010"
FT /db_xref="taxon:1260548"
FT gene 73. .1404
FT /gene="NSs"
FT CDS 73. .1404
FT /codon_start=1
FT /gene="NSs"
FT /product="non-structural protein"
FT /protein_id="AFX74693.1"
FT /translation="MSTVKTTAVEFFSNYGLSCDSRSINDCYRVFSSRGETLMDVFMHS
FT TIGIKSAFSITGLGESEDIKTHEAEIIDEHHNYNVFEKFGLDMNFCNHFLEITVKKPSV
FT KNYETKFQMHNQIFEPSEQLISYGMGKITEKDFYNCSKISPEDIYPSDWFINEAKKKNF
FT YMADISGFSMDWGFSVMGRTTSYWKENMEKTSLVSVKQKSAAFPSVPTNRVLSVSTIKA
FT VEIASKIACDKSTILSVRQDLRSDLRTQFRISLPGEYSDTSVARTYLLHQGSKGQYICI
FT YARTTMDSPNERTTLIIKIFTQSKPRGFTTTLLPNDHSNCRKMVGASFGIVEQKMTDPN
FT YNKIIAHELLSVHTNFALKISKVLQKPVIVYKVYEKELLPKRVEIDGRTFNYQEDIDGN
FT VYFLSTTLAILPLSLSVLSYLDSASPPCWKESKGLGHFTVEEIQ"
FT gene complement(1848. .2672)
FT /gene="NP"
FT CDS complement(1848. .2672)
FT /codon_start=1
FT /gene="NP"
FT /product="nucleocapsid protein"
FT /protein_id="AFX74694.1"
FT /translation="MSTARLSKANVEKLLAGGEADVEIEAEETTGFNFKEFVLANGNVK
FT MTFNNGYTILRNRAAIYKMVKAGNFKFQGKPIVVPNATSNPGQEDWTFRRLEGFIRAKM
FT FMELLAVENSTEQQKMYEKLCDLPMVNAYGLKPSPRFDATTARVMLTLGGPLPLMASLD
FT KFAAAAFPLAYFQNIKKEALGINKFSTYEQLCKIARVMATKEFVFTGTAKEIFEETIKI
FT LNDCTPGTTGAASLNKFNEQIKALENVFGKIVDDNEASSSKPRSASKKNQGF"
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SQ Sequence 2724 BP; 880 A; 527 C; 472 G; 845 T; 0 other;
jx833564 Length: 2724 26-NOV-2012 Type: N Check: 4257 ..
1 agagcaatcg aggtataaac aaataatcat acacagcttg aatcacaata
51 agcaagaaat actaactcag ccatgtctac cgttaaaaca acagcagttg
101 aattcttctc caactacggg ttatcttgcg attcccgttc tatcaatgac
151 tgttacaggg tattctctag cagaggagaa accctcatgg atgtctttat
201 gcactcaact attggcatca aatctgcttt cagtataact ggacttggag
251 aaagtgagga cataaagact catgaagcag aaatcattga tgaacatcac
301 aattataatg tctttgagaa gtttggctta gacatgaatt tctgcaacca
351 ctttttggag ataactgtaa aaaaaccatc tgtaaaaaac tatgagacaa
401 aattccaaat gcacaatcaa atattcgagc cttcagaaca gctgattagc
451 tatggtatgg gtaaaataac agagaaagat ttttacaact gttctaagat
501 ctctcctgaa gacatatacc caagtgattg gtttatcaat gaagctaaga
551 aaaagaactt ttacatggcc gacatctctg ggttcagcat ggactggggt
601 ttttctgtaa tgggaaggac aacatcttac tggaaagaaa acatggaaaa
651 aacatcacta gtttctgtga agcagaaatc agcagctttt ccttcagtgc
701 ctacaaacag agtactatct gtttccacaa tcaaagcggt tgaaatagcc
751 tctaaaattg catgtgataa atcaactatc ctctcagtca ggcaagactt
801 gagatcagat ctaagaactc aattcaggat ctcactgcct ggagaataca
851 gcgatactag tgttgccaga acctacttgc ttcatcaggg cagtaaaggg
901 cagtatatat gcatttatgc aagaactact atggacagtc ctaatgagag
951 aactacattg ataataaaaa tcttcactca aagcaaacca cgtggtttca
1001 ccacaacact tcttccgaat gatcactcca actgtagaaa aatggttgga
1051 gctagttttg gcatagttga acaaaaaatg acagatccta attacaataa
1101 aataattgct catgagctat tgtctgtgca cacaaacttt gctttaaaaa
1151 tatcaaaagt tttacaaaag cctgtgatag tgtacaaagt ctatgagaaa
1201 gaactccttc caaagagagt ggaaatagac ggcagaacgt tcaactacca
1251 agaagacatt gatggtaatg tttattttct gtcaacaact ttggcaattt
1301 tgcctctatc tctttctgtt ttgtcttatc tggattctgc ctccccaccc
1351 tgttggaagg agtctaaagg tttgggccac ttcactgtag aggaaatcca
1401 gtaaatttaa ttataactag ctttttaaga tattagagtt atatcaacct
1451 aatccactct caatgtatgt aaataaatca tttaaatata agccaataaa
1501 tcaaaaacaa caaaaaaatc aaattttaaa ttaaaaacca aaaaaccaaa
1551 aaaaccaaaa aacccaaaaa aaccaaaaag agccttcggg ccgattgtgg
1601 tttccttacc tattacaagc atcagtaaga aaaccatgat ttgcccgaag
1651 gctttttttg ttttttggtt ttttggtttt tttgggtttt gtttatttat
1701 ttatttttat ttcttttatt tattattgtt ttgagttttt attttgtagt
1751 tttatttttt ttaaggtttt ttatgaaaca caataaacac acaaacattt
1801 gcaagctaca taatgcacaa atcatcaacc aagaattaag agatcaatca
1851 gaatccttga ttcttcttag aagcagacct aggttttgaa gaactagctt
1901 cattatcatc aacaatttta ccaaaaacat tctccagagc tttaatctgc
1951 tcattgaatt tgttcaatga agcagcacca gttgtcccgg gagtgcagtc
2001 attcagaatt tttatggtct cttcaaaaat ctctttagca gtcccagtga
2051 aaacaaattc ttttgttgcc ataactctgg ctattttaca tagctgctca
2101 taagtagaga atttgttgat gcccagagcc tcttttttaa tattctggaa
2151 atatgccagc gggaatgcag ctgcagcaaa tttgtctaag cttgccatta
2201 gggggagagg accacctaat gttagcatta ctcttgcagt ggttgcatca
2251 aatctggggc taggtttcaa gccatatgca ttgaccatag ggaggtcaca
2301 cagtttttca tacatttttt gctgctcagt tgaattctct acagcaagca
2351 gttccataaa cattttggct ctaatgaaac cctccaatct cctgaacgtc
2401 caatcttctt gtccagggtt ggaagtagca ttggggacca caatgggttt
2451 cccttggaat ttaaaattcc ctgctttcac cattttgtaa atggcagctc
2501 tatttctcaa aatggtgtaa ccgttgttaa aagtcatttt cacgttgcca
2551 ttagccaata caaattcctt gaagttgaat cctgtggttt cttcagcttc
2601 aatctctaca tctgcttcgc cacctgcaag aagcttctca acgttcgctt
2651 tgctcaacct tgcggtagac atggtgttta cttaggaagc tgcttacttg
2701 gctgaagttg ttcagaattt atgt