Sequence of DPV Spider lily necrotic spot virus
Spider lily necrotic spot virus isolate HLS1-2 segment M, complete sequence.
ACC No: JX833565
Dated: 2012-11-26 | Length: 4741 | CRC: 1283584258
ID JX833565; SV 1; linear; genomic RNA; STD; VRL; 4741 BP.
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AC JX833565;
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DT 26-NOV-2012 (Rel. 114, Created)
DT 26-NOV-2012 (Rel. 114, Last updated, Version 1)
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DE Spider lily necrotic spot virus isolate HLS1-2 segment M, complete
DE sequence.
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KW .
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OS Spider lily necrotic spot virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4741
RA Xu Y., Liu Y.T., Wang W.C., Lou S.G.;
RT "A novel tospovirus cause necrosis on spider lily in southwest of China";
RL Unpublished.
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RN [2]
RP 1-4741
RA Xu Y., Liu Y.T., Wang W.C., Lou S.G.;
RT ;
RL Submitted (15-SEP-2012) to the INSDC.
RL College of Agronomy and Biotechnology, Yunnan Agricultural University,
RL Jinhei Road, Kunming, Yunnan 650201, China
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .4741
FT /organism="Spider lily necrotic spot virus"
FT /segment="M"
FT /host="Hymenocallis littoralis"
FT /isolate="HLS1-2"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="18-Oct-2010"
FT /db_xref="taxon:1260548"
FT gene 48. .974
FT /gene="NSm"
FT CDS 48. .974
FT /codon_start=1
FT /gene="NSm"
FT /product="non-structural protein"
FT /protein_id="AFX74695.1"
FT /translation="MSRITNVFENLGKSEGKEMIPAIKKAETDNRLVLSRKVTSKDVSD
FT AMKKKASTFNGNQYISASDKTVLGSYEGGQSIENSSDDILSRLIVEKSTHLSNWKDDSL
FT VGNGEEKVSCTINIIPTWDSKKKYMHISRLIVWVVPTIPDSKGFVKATIIDQNKLTPKE
FT KLIIGKQGTLENPLCFVFHLNWSFNKDRNVPKRCMQLNLTSNEKYAKGVSFASVMYSWV
FT KNFCDTAIASDSNTCDLIPINRAKAIKSAALIEACKLMIPKGTTGKAIKNQIVSLQKIA
FT EKVALEDDADESTEIVEIDIDDPNNQF"
FT gene complement(1305. .4694)
FT /gene="GnGc"
FT CDS complement(1305. .4694)
FT /codon_start=1
FT /gene="GnGc"
FT /product="glycoprotein precursor"
FT /protein_id="AFX74696.1"
FT /translation="MMNRHYLLLYCLGIYLMFTVTEVFLVNYAEDNEDTKIELKKLKDR
FT YKNDDPRDLLEYEITASSTHPSLDSKTPGRISREATTIDPANSKPQESVFSCDSFTKSS
FT CMIKGVSDFNAHYQIKISDSVFACLTDSEKIFDSCLFDPEIKRRDFLKMPVVPVLKLEN
FT KRVLEVGSKFFFVDSSNNPILSDPASSMLKPTISRLSVRLSGDCVISQVSMSTPYMIKI
FT KSNENIGFAVKNIRDPQAVNFQTTSGERSVYFKTQELDGNHFFLCGDKSSFIKKVDIPV
FT RNCVSKYTNEPKKIFFCANFSYFKWIFIFLLIAFPVTWMLWKTKNAFSVWYDVLGILTY
FT PVLILLNYVWLYFPFRCRLCGNLSFLTHTCSKLCVCNQCEPSKEHAKECYLFSKDTKKW
FT KSLSLIDHFQFTINTKISSEFLVFLTKMLIAAILISYIPSSLALSMGKNVCVEKCYYSK
FT DLERLTTDKDGSSKNAVDTCECSIGELITETVYRDGTPVSRAATKNNCVLSSSTCLTSL
FT NQAKNLFACRNGCNALVALEKIPRVEYSNGYRGTEYSGNLTVLKIANRLRKGFVDNQAD
FT VRNLESRVSKELVYFKSLKVDDIPPENLMPRQSLVFSTEVDGKYRYLIEMDIKKETGSV
FT FLLNDDSSHIPMEFMIYVKSVGVEYDIRYKYSTAKVDTTVTDYLSTCTGSCNDCRKLKA
FT PAGKNDFRVQPTSWWGCEELGCLAINEGAICGHCTNVFDLSTLVNVYQVVQSHVTAEIC
FT IKSLNGYDCRKHTDRVPIQTEYYQLDMSVDLHNDFMSTDKLFAINKQQKVLTGSISDLG
FT DFSSGAFGHPQINADGTLLSVPAMIPRDHFSWSCSAVGAKSVNIRQCGIFSYNMIYALT
FT QSKDFSILSEDQNKLYMTKDFLVGKLKVVIDMPKEMFKKPSSKPVLSETKVSCTGCFKC
FT AMGLECDIEYTSDTTFSSRLEIEGCSFKSDQLGSYIGPNKKKFKAYCSDSLKDKSIKMI
FT AEDQDELSIELKIDQVDVIDQDTIISYDDKSAHDENIHHADTGLATLWDWIKAPFNWVA
FT SFFGSFFDVVRVLLVILAVCVGIYIISYIYNLSFSYYKEKRKRKMEFDLEEVSRSLLTM
FT SKRDGEPRRRSPPKTFEFPLEF"
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SQ Sequence 4741 BP; 1549 A; 857 C; 840 G; 1495 T; 0 other;
jx833565 Length: 4741 26-NOV-2012 Type: N Check: 8077 ..
1 acaattaaat atctaaaaca gcttctgcca agtgattcgt aaccagtatg
51 tctcgcataa ctaacgtgtt tgaaaacctc ggcaaaagtg aaggcaaaga
101 aatgattcct gcaattaaga aagctgaaac agacaacaga ctcgttttga
151 gcaggaaagt gacaagcaaa gatgtgagtg atgccatgaa gaaaaaagct
201 tctacattta atggcaatca atacatctct gcttctgaca aaactgtttt
251 gggttcctat gaaggtggtc aatctataga gaacagttca gatgatatct
301 tgtccaggct tatagtcgag aaaagcactc atctgagtaa ttggaaagat
351 gattctcttg ttggcaatgg agaggaaaaa gtgagctgta caataaatat
401 cattccaaca tgggacagca agaagaaata catgcatata tcaaggctga
451 ttgtgtgggt tgttcccaca ataccggact ctaaaggatt tgtgaaagca
501 acaataatag atcaaaacaa gctgactcct aaagaaaagc taatcattgg
551 caagcaagga acacttgaga accctttgtg ttttgttttc catctgaact
601 ggtcttttaa caaagacaga aatgtaccaa agagatgcat gcagctcaat
651 ctaacgagca atgaaaaata tgcaaaagga gtttcctttg catcagttat
701 gtattcttgg gtgaagaatt tctgtgatac agctatagct tccgacagca
751 acacatgtga tttgattcct atcaatagag ctaaagcaat caaatctgct
801 gctctaattg aagcatgcaa actcatgatc ccgaaaggaa ctacaggaaa
851 ggctataaag aaccagatag tgtctctcca aaaaattgct gagaaagtag
901 cattagaaga tgatgctgat gaaagtacag aaattgtaga gatagatata
951 gatgatccta ataatcaatt ttaaaagaac taaagatctt tcatatgtct
1001 atctttatta aataaaatcg taaaacaaac aaaacaaaaa taaagaagaa
1051 aagaacaaaa aaagagaaaa agaaaaaaca aaaaaagaaa aaaagaagaa
1101 aacaaaaaag aaaaagaaaa agaaaaaaca aaaagaaaag aaaaagaatg
1151 tatataaata aggccaaggc caactttggc ctttttaggc tctttttgtt
1201 ttattttatt tctattttat tttattttta attttatttt tattttattt
1251 ttttgttttt gtttcattta tttattttat ctgcatttga atacttcatc
1301 tggtctagaa ctctagagga aattcaaatg tttttggcgg gcttcttctt
1351 ctaggttctc catctctctt tgacatagtc aaaagagatc gactgacttc
1401 ttcaaggtcg aactccattt tcctttttct tttttcttta taataactaa
1451 aagataagtt atagatataa ctgattatgt aaattcctac acagacagct
1501 aaaatcacta aaagtaccct cactacatca aagaaactac cgaaaaatga
1551 cgctacccaa ttgaaaggag cttttatcca atcccacaat gtagccaacc
1601 ctgtgtcagc atgatgtatg ttctcgtcat gagcgctctt atcatcataa
1651 ctaattatag tgtcttggtc tataacatcc acttgatcga ttttcagctc
1701 aattgacaat tcatcttgat cctctgcaat cattttgatg cttttatctt
1751 ttagactgtc tgaacaatat gccttgaact ttttcttatt aggaccaatg
1801 taactgccta attggtcaga tttaaatgaa caaccttcaa tctccaacct
1851 agaagagaat gtagtgtcag aagtatattc tatgtcacat tctaaaccca
1901 tagcacattt aaaacagcct gtgcagctaa cttttgtttc gctaagcact
1951 ggtttgcttg atggtttttt aaacatctct ttgggcatat caataacaac
2001 ttttaatttc cctacaagaa aatctttagt catgtaaagc ttgttttgat
2051 cttcactgag gatagaaaag tcttttgatt gggtcaatgc atatatcata
2101 ttgtaactaa atattccgca ttgccttata ttgactgatt tggcaccaac
2151 tgcagaacaa ctccaagaaa aatgatctcg aggtatcata gctggtactg
2201 atagtaaagt tccatctgca tttatttgag gatgaccaaa agcacctgac
2251 gagaagtcac ctaagtctga gatacttcct gtaagaactt tttgttgctt
2301 gttgatggca aacagtttgt cggtgctcat gaagtcatta tgaagatcca
2351 cagacatgtc taactgataa tactcagttt gtattgggac tctatctgtg
2401 tgcttcctgc agtcatatcc attaagagac ttaatgcata tctctgcagt
2451 gacatggctt tgaacaacct gataaacatt aaccagtgtg ctaagatcaa
2501 aaacatttgt gcaatgtccg cagatagcac cttcatttat agcaaggcaa
2551 cctagttctt cgcagcccca ccaggatgta ggttggacac gaaaatcatt
2601 tttccctgca ggagctttca actttctaca atcattgcag ctgcctgtgc
2651 aggttgaaag gtaatctgtc actgtcgtgt ccacttttgc tgttgaatat
2701 ttgtatctga tatcatattc tacacctaca cttttaacat aaatcatgaa
2751 ttccataggt atgtgtgagc tgtcatcatt tagcaaaaag acagatccag
2801 tctctttctt tatgtccatt tcgatcaagt atctgtattt cccatcaact
2851 tctgttgaga agactaaaga ttgtctaggc attagatttt ctggaggaat
2901 gtcatctacc ttcaagctct tgaagtatac tagttctttg gaaactctag
2951 attctaaatt tctgacatca gcctggttat cgacaaatcc tttcctaagc
3001 ctattagcta ttttcagcac agttaagtta ccagaatatt ctgttcctct
3051 gtaaccatta ctgtattcta ctctaggtat cttttccagt gctactaaag
3101 cattgcaacc attcctgcat gcaaaaagat ttttagcttg attgaggctg
3151 gtgaggcatg tagaagatga taaaacacaa ttgttcttcg tagctgctct
3201 agatacagga gtaccgtctc tataaacagt ttctgttatt agttctccga
3251 ttgaacactc acatgtgtct acggcatttt ttgatgagcc atctttgtcg
3301 gtagtcagtc tttcgagatc tttgctataa taacattttt ccacgcaaac
3351 attctttccc atagaaagcg ctaagctgga tggtatgtaa gaaatcaaaa
3401 tagcagctat aagcattttt gtcaagaaaa caagaaattc agagctgatt
3451 tttgtgttga tagtgaattg aaagtgatca atcagagaca aacttttcca
3501 tttttttgta tcctttgaga acaaatagca ttctttagca tgttctttag
3551 atggctcaca ttggttgcaa acacataact tggagcatgt gtgagtgagg
3601 aaagacaagt ttccacataa tctacatctg aatggaaagt acaaccatac
3651 ataatttaat aggatgagaa ccggataagt caaaatccct agaacgtcat
3701 accaaacaga aaaagcattt tttgtcttcc agagcatcca tgtgacaggg
3751 aaagctatta acaaaaatat gaaaatccat ttgaagtatg agaaattggc
3801 acagaagaaa attttctttg gttcatttgt gtatttagaa acacaatttc
3851 tcactggaat gtctactttc tttataaagc tggatttgtc tccacaaaga
3901 aagaaatggt ttccatctag ttcctgggtt ttgaagtaga cagatctctc
3951 accagaagtt gtttgaaagt taacagcttg aggatctctt atgttcttaa
4001 cagcaaatcc tatattttca ttggatttga ttttaatcat ataaggtgtt
4051 gacattgaca cttgacttat gacacagtca ccagaaagcc taacagaaag
4101 tctggagatt gttggcttca gcatgcttga ggcaggatca gacaggattg
4151 gattgttaga tgaatctaca aagaagaact tagagccaac ctcaaggact
4201 ctcttgttct ccaactttag aacaggaaca acaggcattt taaggaagtc
4251 tcttcttttg atctctggat caaacaaaca tgaatcaaat attttctctg
4301 agtcagttaa gcaagcaaaa actgagtcag agatctttat ttggtaatga
4351 gcattgaaat cacttacacc tttgatcatg cagctagatt tagtgaaact
4401 gtcacaagaa aaaacacttt cttgtggttt ggaatttgca ggatcaattg
4451 ttgtagcctc tctagaaatc ctacccggag tctttgagtc caaagacggg
4501 tgagtgctag aggctgtaat ttcatactca agaagatctc gtggatcgtc
4551 atttttgtat ctatctttta acttcttcaa ctcaatcttg gtgtcttcgt
4601 tgtcttctgc atagttcacc aggaacactt ctgttacagt gaacatcagg
4651 tatataccaa gacagtagag tagtagatag tgtcgattca tcataggctg
4701 cctgtttagg gagagttttt aattattgca ccgattgctc t