Sequence of DPV Macroptilium yellow spot virus
Macroptilium yellow spot virus isolate BR:Oaf13:11 segment DNA-A, complete sequence.
ACC No: KC004129
Dated: 2013-01-23 | Length: 2658 | CRC: 1821802885
ID KC004129; SV 1; circular; genomic DNA; STD; VRL; 2658 BP.
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AC KC004129;
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DT 21-NOV-2012 (Rel. 114, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
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DE Macroptilium yellow spot virus isolate BR:Oaf13:11 segment DNA-A, complete
DE sequence.
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KW .
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OS Macroptilium yellow spot virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2658
RX PUBMED; 23136367.
RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT "Synonymous site variation due to recombination explains higher genetic
RT variability in begomovirus populations infecting non-cultivated hosts";
RL J. Gen. Virol. 94(PT 2):418-431(2013).
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RN [2]
RP 1-2658
RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT ;
RL Submitted (24-OCT-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 4.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2658
FT /organism="Macroptilium yellow spot virus"
FT /segment="DNA-A"
FT /host="Phaseolus vulgaris"
FT /isolate="BR:Oaf13:11"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2011"
FT /clone="RC89-1"
FT /db_xref="taxon:1129034"
FT CDS 202. .957
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /protein_id="AFX60774.1"
FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY
FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATI
FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSILN"
FT CDS complement(954. .1352)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /protein_id="AFX60775.1"
FT /translation="MDSRTGELITAHQAENGVYIWEISNPLYFKINHVEDPLYTTTRIY
FT HVQIRFNHNLRRALALHKAYLNFQVWTTSLRASGTTYLVRFKYLVMLYLDRIGVISLNN
FT VIRAVRFATDKSYVNDVLENHEIKFKFY"
FT CDS complement(1099. .1488)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /protein_id="AFX60777.1"
FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQPRGGSTIHDNQNIPRPDQVQPQPQESI
FT GSPQGISQFPSLDDIPESFWDDIFS"
FT CDS complement(1439. .2485)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /protein_id="AFX60776.1"
FT /translation="MPPPRRFKIQSKNYFLTYPKCSISKEEALAQLLALDTPTNKKYIR
FT VCRELHGNGEPHLHALLQFEGKFTCTNCRFFDLRHPSHSNVCHGKYESCKSSSDAKSYI
FT EKDGDYVEWGDFQIDGRSARGGQQTVNDTYAKALNASCAEEALQIIKEEQPQHFFLQHH
FT NLVANAFRIFQKAPEPWTPPFPLSSFINVPEEMKAWADDYFGRSAAARPERPISIIIEG
FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAQFVFLN
FT SPLYQSST"
FT CDS complement(2071. .2328)
FT /codon_start=1
FT /product="AC4"
FT /protein_id="AFX60778.1"
FT /translation="MGSLISMLCCNSKVSSHARIADSSTCDIPVIQMFVMENTNHASHP
FT PTPNHILRRTEITSNGVIFRSTDDLLEEVNRQLTIHMQRR"
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SQ Sequence 2658 BP; 703 A; 547 C; 603 G; 805 T; 0 other;
kc004129 Length: 2658 23-JAN-2013 Type: N Check: 3186 ..
1 accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct
51 tttggaccga gtgtatttga attaaagtca gttattttat ttggtccaat
101 gaatatgcgt ctgactagct tagataatga caacttggtc cccaagttgg
151 tggctaacgg gtatatatgt taagaataac tgactatttc tttaattcag
201 aatggttaag cgggacgccc catggcgcca catggcagga acctcaaagg
251 tttcccgcaa taacaactat tctcctcgtg gaggtggagg tccaaaaaac
301 aacagggcct ctgaatgggt taataggccc atgtacagaa agcccaggat
351 atatcggatg tacagaaccc ccgatgtgcc tagagggtgt gaaggcccat
401 gtaaggttca gtcctttgaa caacgacacg atatatccca tgttggtaag
451 gttatctgta tgtctgacgt gacaagaggt aatggtatta cccatcgtgt
501 aggaaaacgt ttttgtgtta agtctgtata tattctaggt aagatatgga
551 tggacgagaa catcaagttg aagaatcaca cgaacagtgt gatgttttgg
601 ttggtcagag acagaagacc ctatagctct cccatggact ttggccaagt
651 gttcaacatg tttgacaatg agcccagtac tgctacgatt aagaacgatc
701 ttcgtgatcg ttttcaagtc atgcatcgat tttatgccaa agtcactggt
751 ggacagtatg cgagcaacga gcaagcaatt gtcaggcgtt tttggaaggt
801 caacaatcat gttgtctata accaccaaga agcagggaaa tacgagaatc
851 atacggagaa cgccttacta ttgtatatgg catgtactca tgcctctaac
901 cccgtgtatg caactttaaa aattcggatc tatttttatg attcgatact
951 caattaataa aatttgaatt ttatttcatg attctccagt acatcattta
1001 catatgactt gtccgttgca aaacgaacag ctctgattac attgttaagc
1051 gaaataacac ctattcggtc taagtacaac atgactaagt atttaaacct
1101 aactaaatat gtcgtcccag aagctctcag ggatgtcgtc cagacttgga
1151 aattgagata tgccttgtgg agagccaatg ctctcctgag gttgtggttg
1201 aacctgatct ggacgtggta tattctggtt gtcgtgtata gtggatcctc
1251 cacgtggttg atcttgaaat aaaggggatt tgatatctcc cagatataga
1301 cgccattctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc
1351 atgtcctctg cagttgatat ggacgtatat ggagcacccg caatctatgt
1401 caattcgtct tctcctgatt gctctcttct tggccgctct atgttgaact
1451 ttgatagagg ggggagttga ggaagacgaa ttgcgcattg tgtatcgtcc
1501 actgtctaag tgatgcgttt tcctctttgt cgaggaatga tttatagctg
1551 gcgccctcgc caggattgca aagcacaatg catgggattc cacctttaat
1601 ttgaactggc ttcccgtatt tgcaattcga ttgccagtcc ttttgagcac
1651 ctatcaattc tttccagtgc tttaacttta gatattgcgg tgcgatgtca
1701 tctatgacgt tgtactgcac atcatttgaa tagacctttg aattgaaatc
1751 gaggtgacca ctcaagtaat tatgggaccc caatgcacgt gcccacatgg
1801 tcttgcccgt tcgagagtca ccctcgatga ttatacttat tggtctctcc
1851 ggccgcgcag cggcacttct tccgaaatag tcatctgccc aagctttcat
1901 ctcttctggg acattaatga aagaagagag tggaaacgga ggagtccatg
1951 gctccggagc cttttgaaag atacgaaatg cgttagccac aagattgtga
2001 tgttggagga agaagtgctg tggttgttcc tcctttatta tttgaagtgc
2051 ttcttcagca caagaagcat ttaacgcctt tgcatatgta tcgttaactg
2101 tctgttgacc tcctcgagca gatcgtccgt cgatctgaaa atcaccccat
2151 tcgacgtaat ctccgtcctt ctcaatatat gatttggcgt cggaggatga
2201 cttgcatgat tcgtattttc catgacaaac atttgaatga ctgggatgtc
2251 gcaagtcgaa gaatctgcaa ttcgtgcatg tgaacttacc ttcgaattgc
2301 agcaaagcat ggagatgagg ctccccattt ccgtgtaatt ctctgcatac
2351 acggatatat tttttgtttg taggagtgtc taaggctaga agttgagcaa
2401 gtgcctcttc tttggagata gagcacttgg gataagtaag gaaataattt
2451 ttggactgaa ttttaaaacg tctgggcggt ggcatatttg taaataaaga
2501 gatgtctcca aatggcactc ttgtaattat gcgagtgtct ccaattccgc
2551 tccgctcaaa cttgctctat caattggaga ctggagacaa tttatactag
2601 aaccctcaat agaacttcta atcgtattca cacacgtggc ggccatccgt
2651 ataatatt