Sequence of DPV Horsegram yellow mosaic virus
Horsegram yellow mosaic virus isolate India:Banglore:French bean:2011 segment DNA-A, complete sequence.
ACC No: KC019306
Dated: 2013-02-19 | Length: 2735 | CRC: -16040571
ID KC019306; SV 1; circular; genomic DNA; STD; VRL; 2735 BP.
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AC KC019306;
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DT 19-FEB-2013 (Rel. 115, Created)
DT 19-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE Horsegram yellow mosaic virus isolate India:Banglore:French bean:2011
DE segment DNA-A, complete sequence.
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KW .
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OS Horsegram yellow mosaic virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2735
RA Bhatt B.S., Singh R.P., Kale R.K., Singh A.K.;
RT "Molecular Characterization of Bean Dwarf Mosaic Virus";
RL Unpublished.
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RN [2]
RP 1-2735
RA Bhatt B.S., Singh R.P., Kale R.K., Singh A.K.;
RT ;
RL Submitted (29-OCT-2012) to the INSDC.
RL School of Life Sciences, Central University of Gujarat, Sector-30,
RL Gandhinagar, Gujarat 382030, India
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2735
FT /organism="Horsegram yellow mosaic virus"
FT /segment="DNA-A"
FT /host="Phaseolus vulgaris"
FT /isolate="India:Banglore:French bean:2011"
FT /mol_type="genomic DNA"
FT /country="India"
FT /isolation_source="leaf"
FT /collection_date="2011"
FT /clone="15"
FT /db_xref="taxon:263793"
FT gene 145. .495
FT /gene="AV2"
FT CDS 145. .495
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGF33905.1"
FT /translation="MWDPLLNDFPKTVHGFRCMLAIKYLQQVQENYSTNSVGFLYITEL
FT IQVLRIRKHAKAELRYRLLYPGIQCSSETDLRHPPGATCFCGKCSCQREKTSVDQPSHV
FT EETEILSVVSFS"
FT gene 305. .1078
FT /gene="AV1"
FT CDS 305. .1078
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /note="role in encapsidation of virus particles"
FT /protein_id="AGF33906.1"
FT /translation="MPKRNYDTAFSTPGSSVRRRLTYDTPLALPASAGSAPASVRRRRW
FT TNRPMWRKPRFYRLYRSPDVPRGCEGPCKVQSFEARHDISHVGKVICVTDVTRGSGLTH
FT RVGKRFCVKSIFITGKIWMDENIKTKNHTNTVMFKLVRDRRPFGTPQDFGQVFNMYDNE
FT PSTATVKNDLRDRYQVVRKFHATVTGGQYACKEQAIISRFYRVNNHVVYNHQEAAKYDN
FT HTENALLLYMACTHASNPVYATLKIRIYFYDSISN"
FT gene complement(1075. .1479)
FT /gene="AC3"
FT CDS complement(1075. .1479)
FT /codon_start=1
FT /gene="AC3"
FT /product="REn protein"
FT /note="replication enhancer protein"
FT /protein_id="AGF33907.1"
FT /translation="MDFRTGDNITAAQLRNGVYIWEVRNPLSFKILQHRPMGAGSRMIV
FT TQIRLMFNHGLKKALQMHKCFLDLKLYHYMTATSGMILSIFRNQLFRYINNLGVISLGN
FT VLNGASHILYEKLHQVEDVSFTHNVQYKLY"
FT gene complement(1220. .1627)
FT /gene="AC2"
FT CDS complement(1220. .1627)
FT /codon_start=1
FT /gene="AC2"
FT /product="TrAP protein"
FT /note="transcription activator protein"
FT /protein_id="AGF33908.1"
FT /translation="MRNSTPSKNHSSPPSIKAQHRVAKKRAIRRSRIDLTCGCSYYIHI
FT NCRNYGFSHRGQHHCSSTQEWRLYLGGAKSPLFQDPSTSSNGSRVPNDRDPNPPNVQPR
FT TEESIADAQMLPRPEAVPLYDGDFWDDIINF"
FT gene complement(1527. .2615)
FT /gene="AC1"
FT CDS complement(1527. .2615)
FT /codon_start=1
FT /gene="AC1"
FT /product="Rep protein"
FT /note="replication initiator protein"
FT /protein_id="AGF33909.1"
FT /translation="MPRERRFAINAKNYFLTYPRCPLTKEDTLEQLLALSTPVNKRFIR
FT ICRELHENGEPHLHVLLQFEGKFHTRNQRFFDLVSSTRSTHFHPNIQAAQSCSDVKQYM
FT EKDGDVLDHGTFQIDGRSARGGKQSANDAYAEALNCGSKSQALDILKEKAPKDYILQFH
FT NLNCNLTKIFISPIQAYVSPYSIDTFNRVPEYISSWASENVRDPAARPERPISIVIEGD
FT SRTGKTMWARALGPHNYLCGHLDLNDKIFSNEAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNVKYGKPTHIKGGIPTIFLCNPGPKSSYKEYLDEADNASLKVWASKNAEFYTLKEPL
FT FSSVDQSATQGCQEASNSTLSN"
FT gene complement(2165. .2458)
FT /gene="AC4"
FT CDS complement(2165. .2458)
FT /codon_start=1
FT /gene="AC4"
FT /product="AC4 protein"
FT /protein_id="AGF33910.1"
FT /translation="MENLISMFCCNSKANSTHVTKGSSTWYPQPGQHISIRTFRQLKAA
FT QMLSNTWRKTETSLIMEPSKSMEDRLEEVNSLPTTRMPRHSTVDPNHRPSIY"
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SQ Sequence 2735 BP; 701 A; 579 C; 621 G; 834 T; 0 other;
kc019306 Length: 2735 19-FEB-2013 Type: N Check: 5120 ..
1 acctgagtgc cccgcgatcg gttacactct gcttttgctt ttggaccgct
51 ttacttttag tcgttcaatg agaagcgctc ttcagcacta cgataattca
101 aatttgaatt ataaagctaa tggccacgtt gcatcgcatt aaccatgtgg
151 gatccattgt tgaacgactt tcccaaaaca gtgcatggtt tccgatgtat
201 gcttgcaatt aagtacttgc agcaagttca agagaattat tccactaatt
251 ctgttggttt tttgtatatc acagagctaa tacaggtatt acgcattcgg
301 aaacatgcca aagcggaact acgataccgc cttctctacc ccgggatcca
351 gtgttcgtcg gagactgact tacgacaccc ccctggcgct acctgcttct
401 gcgggaagtg ctcctgccag cgtgagaaga cgtcggtgga ccaaccgtcc
451 catgtggagg aaaccgagat tttatcggtt gtatcgttct cctgatgtcc
501 cacgtggttg tgaaggaccg tgtaaggtcc aatcatttga ggcgagacat
551 gacatctcgc atgtgggcaa agtcatttgt gtcacggatg tgactcgtgg
601 tagtggtctc actcatcgtg tcggtaaacg attttgtgtt aagtccatct
651 tcattacggg aaagatttgg atggacgaaa acatcaagac caagaatcac
701 actaacactg tgatgttcaa attggttcgt gataggcgtc cttttggaac
751 gccccaggac tttggtcaag ttttcaacat gtatgataat gaacccagta
801 ctgccactgt gaagaacgat cttcgtgatc gttatcaggt cgtgcgtaag
851 tttcatgcca ccgtgactgg tggccagtat gcgtgcaagg agcaagctat
901 aattagccga ttttatcgtg ttaataatca tgttgtttac aaccatcagg
951 aagctgcgaa gtatgacaat catactgaga acgctttgtt attgtatatg
1001 gcatgtactc atgcttctaa tcctgtgtat gcaactctta agattcggat
1051 ctatttttat gattcgatat caaattaata aagcttgtat tgaacattat
1101 gcgtaaagct tacatcctcc acctggtgga gtttttcata caggatatgt
1151 gatgcgccat ttaatacatt gcctaagcta atgacgccta aattatttat
1201 atatctaaat aattggttcc taaaaattga taatatcatc ccagaagtcg
1251 ccgtcatata gtggtacagc ttcaggtcga ggaagcattt gtgcatctgc
1301 aatgctttct tcagtccgtg gttgaacatt aggcggattt gggtcacgat
1351 cattcgggac cctgctccca ttggacgatg ttgaaggatc ttgaaagaga
1401 ggggatttcg cacctcccag atatagacgc cattcctgag ttgagctgca
1451 gtgatgttgt ccccggtgcg aaaatccata gttgcgacag ttgatgtgaa
1501 tgtagtagct acacccacag gttaagtcaa ttcgagagcg tcgaattgct
1551 cgcttcttgg caaccctgtg ttgcgctttg atcgacggag gagaagagtg
1601 gttctttgag ggtgtagaat tccgcatttt ttgaagccca cacctttagc
1651 gacgcattat cagcttcgtc caagtactct ttataggagg atttgggacc
1701 tgggttacag agaaagatgg tggggattcc acctttaatg tgtgtgggct
1751 ttccgtattt tacatttgac tgccagtctc tttgcgcgcc catgaattct
1801 ttgaaatgtt tcaaataatg tggatcaacg tcatcgatga cgttatacca
1851 tgcctcgtta gagaaaatct tatcgttcag atccaagtgg ccgcaaagat
1901 aattatgagg acccaatgct cttgcccaca tggttttacc cgtccgacta
1951 tcaccttcaa tcactatact tatgggtctc tccggccgcg cagcgggatc
2001 ccttacattt tctgaagccc atgaagaaat atattctgga actctattaa
2051 atgtatctat actataaggc gacacatatg cctgaatagg cgaaatgaaa
2101 atcttagtca aattacaatt taaattatga aattgtaaaa tataatcctt
2151 tggagccttc tctttcaata tatcgagggc ctgtgatttg gatccacagt
2201 tgagtgcctc ggcatacgcg tcgttggcag actgtttacc tcctctagcc
2251 gatcttccat cgatttggaa ggttccatga tcaaggacgt ctccgtcttt
2301 ctccatgtat tgcttaacat ctgagcagct ttgagctgcc tgaatgttcg
2351 gatggaaatg tgttgacctg gttgaggata ccaggtcgaa gaacctttgg
2401 ttacgtgtgt ggaatttgcc ttcgaattgc agcagaacat ggagatgagg
2451 ttctccattc tcgtgaagct ctcggcagat gcgaatgaat cttttgttaa
2501 ctggtgttga caaagctaat agttgctcca gtgtgtcctc tttagttaga
2551 ggacatcgag gatatgtaag gaaatagttt ttagcgttta tagcaaaacg
2601 acgctctctt ggcattttta aagtcgtttt tgtatcggtt gtccaccgat
2651 tctcatttac tcctgtcaat cggtgaatgg tgacgcatat atagtagagc
2701 tactaatccc ccaaggggca ctcagcaata atatt