Sequence of DPV Tomato yellow leaf curl virus
Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:11-1], complete genome.
ACC No: KC106637
Dated: 2013-06-27 | Length: 2779 | CRC: -1471441285
ID KC106637; SV 1; circular; genomic DNA; STD; VRL; 2779 BP.
XX
AC KC106637;
XX
DT 27-JUN-2013 (Rel. 117, Created)
DT 27-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:11-1], complete
DE genome.
XX
KW .
XX
OS Tomato yellow leaf curl virus - Il
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2779
RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT "Genomic diversity of the severe strain isolates of Tomato yellow leaf curl
RT virus (TYLCV-IL) in Iran";
RL Unpublished.
XX
RN [2]
RP 1-2779
RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT ;
RL Submitted (31-OCT-2012) to the INSDC.
RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Chromas v. Lite 2.01
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2779
FT /organism="Tomato yellow leaf curl virus - Il"
FT /host="Datura stramonium"
FT /isolate="TYLCV-IL[IR:Boj:11-1]"
FT /mol_type="genomic DNA"
FT /country="Iran:Bojnurd"
FT /collection_date="20-Aug-2011"
FT /db_xref="taxon:66366"
FT gene 146. .496
FT /gene="V2"
FT CDS 146. .496
FT /codon_start=1
FT /gene="V2"
FT /product="movement-like protein"
FT /protein_id="AGO02054.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSEP"
FT gene 306. .1082
FT /gene="V1"
FT CDS 306. .1082
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /protein_id="AGO02055.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1079. .1483)
FT /gene="C3"
FT CDS complement(1079. .1483)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AGO02057.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKIMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDSLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1224. .1631)
FT /gene="C2"
FT CDS complement(1224. .1631)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /protein_id="AGO02058.1"
FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEDNGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1540. .2613)
FT /gene="C1"
FT CDS complement(1540. .2613)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /protein_id="AGO02056.1"
FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA
FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKTWALKNATFVTLYEPLFA
FT SINQGQTQDIQEENNKA"
FT gene complement(2169. .2477)
FT /gene="C4"
FT CDS complement(2169. .2477)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /protein_id="AGO02059.1"
FT /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSTYPLQAGQHISIRTFR
FT QLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY"
XX
SQ Sequence 2779 BP; 770 A; 530 C; 611 G; 868 T; 0 other;
kc106637 Length: 2779 27-JUN-2013 Type: N Check: 3003 ..
1 accggatggc cgcgcttttt ttgtatgtgg tccccacgag tgttccgcag
51 acgtcactgt caaccaatca aattgcatcc tcaaacgtta gataagtgtt
101 catttgtcta tatatacttg gtccccaagt aatttgtctt gcaatatgtg
151 ggacccactt ctaaatgaat ttcctgaatc tgttcacgga tttcgttgta
201 tgttagctat taaatatttg cagtccgttg aggaaactta cgagcccaat
251 acattgggcc acgatttagt tagggatctt atatctgttg taagggcccg
301 tgactatgtc gaagcgacca ggcgatataa tcatttccac gcccgtctcg
351 aaggttcgcc gaaggctgaa cttcgacagc ccatacagca gccgtgctgc
401 tgtccccatt gtccaaggca caaacaagcg acgatcatgg acgtacaggc
451 ccatgtaccg aaagcccaga atatacagaa tgtatcggag ccctgatgtt
501 ccccgtggat gtgaaggccc atgtaaagtc cagtcttatg agcaacggga
551 tgatattaag catactggta ttgttcgttg tgttagtgat gttactcgtg
601 gatctggaat tactcacaga gtgggtaaga ggttctgtgt taaatcgata
651 tattttttag gtaaagtctg gatggatgaa aatatcaaga agcagaatca
701 cactaatcag gtcatgttct tcttagtccg tgatagaagg ccctatggaa
751 acagcccaat ggattttgga caggttttta atatgttcga taatgagccg
801 agtactgcaa ccgtgaagaa tgatttgcgg gataggtttc aagtgatgag
851 gaaatttcat gctacagtta ttggtgggcc ctctggaatg aaggaacagg
901 cattagttaa gagatttttt aaaattaaca gtcatgtaac ttataatcat
951 caggaggcag ccaagtacga gaaccatact gaaaatgcct tgttattgta
1001 tatggcatgt acgcatgcct ctaatccagt gtatgcaact atgaaaatac
1051 gcatctattt ctatgattca atatcaaatt aataaaattt atattttata
1101 tcatgagttt ctgttacatt tattgtgttt tcaagtacat catacaatac
1151 atgatcaact gctctgatta cattgttaat ggaaattaca ccaagactat
1201 ctaaatactt aagaacttca tagctaaata ctcttaagaa acgaccagtc
1251 tgaggctgta atgtcgtcca aattcggaag ttgagaaaac atttgtgaat
1301 ccccattatc ttcctgatgt tgtggttgaa tcttatctga atggaaatga
1351 tgtcgtggtt cattagaaat ggcctctggc tgtgttctgt tatcttgaaa
1401 tagaggggat tgtttatctc ccagataaaa acgccattct ctgcttgagg
1451 agcagtgatg agttcccctg tgcgtgaatc catgattatt gcagttgagg
1501 tggaggtagt atgagcagcc acagtctagg tctacacgct tacgccttat
1551 tgttttcttc ttggatatct tgtgtttgac cttgattgat acttgcgaac
1601 agtggctcgt agagggtgac gaaggttgca ttcttgagag cccaagtttt
1651 caaggatatg tttttttctt cgtctagata ttccctatat gaggaggtag
1701 gtcctggatt gcagaggaag atagtgggta ttcccccttt aatttgaatg
1751 ggctttccgt actttgtgtt gctttgccag tccctctggg cccccatgaa
1801 ttccttgaag tgctttaaat agtgcgggtc tacgtcatca atgacgttgt
1851 accacgcatc attactgtac acctttggac ttaggtctag atgtccacat
1901 aaataattat gtgggcctag agacctggcc cacattgttt tccctgttct
1951 actatcaccc tcgatgataa tactattagg cctccatggc cgcgcagcgg
2001 aagacatgac gttctctgac acccatactt caagttcatc tggaacttga
2051 ttaaaagatg aagataaaaa gggagaaata taaggagccg gaggctcttg
2101 aaaaatccta tctaaatttg aacttaaatt atgaaattgt aaaatataat
2151 cctttggggc cttctctttc aatatattga gggcctcgga ttttctgcct
2201 gaattgagtg cttcggcata tgcgtcgttg gcagattgct gacctcctct
2251 agctgatctg ccatcgattt ggaaaattcc aaaatcaatg aagtctccgt
2301 ctttctccac gtaggtcttg acatctgttg agctcttagc tgcctgaatg
2351 ttcggatgga aatgtgctga cctgcttgga gaggataagt cgaagaatcg
2401 ttggttctta cactggtact ttccttcgaa ctggatgaga acatggagat
2451 gaggagaccc atcttcatgt agttcatgcg caactcgtat gaatttcttg
2501 ttagttggtg tatttagggc aagtaattgg gaaagtgctt cttctttaga
2551 gagagaacaa ttaggataag tcaggaaata atttttggca tatattttaa
2601 atagacgagg catggtgaaa tgaatcggtg tccctcaaaa ctctatggca
2651 atcggtgtat ccggtgtctt acttatacct agacacccaa tggctatttg
2701 gtaatttcgt aaaagtaaat gtaattcaaa attcaaaatt caaaaatcaa
2751 atcattaaag cggccatccg tataatatt