Sequence of DPV Bermuda grass southern mosaic virus
Bermuda grass southern mosaic virus isolate Andimeshk polyprotein gene, partial cds.
ACC No: KC107759
Dated: 2013-01-29 | Length: 1248 | CRC: 47671065
ID KC107759; SV 1; linear; genomic RNA; STD; VRL; 1248 BP.
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AC KC107759;
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DT 29-JAN-2013 (Rel. 115, Created)
DT 29-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Bermuda grass southern mosaic virus isolate Andimeshk polyprotein gene,
DE partial cds.
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KW .
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OS Bermuda grass southern mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus; unclassified Potyvirus.
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RN [1]
RP 1-1248
RA Masumi M., Farahbakhsh F., Afsharifar A., Izadpanah K.;
RT "Genetic variation of Bermuda grass southern mosaic virus isolates based on
RT sequence of 3' region of genome";
RL Iran. J. Plant Pathol. 49:0-0(2012).
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RN [2]
RP 1-1248
RA Masumi M., Farahbakhsh F., Afsharifar A., Izadpanah K.;
RT ;
RL Submitted (31-OCT-2012) to the INSDC.
RL Plant Virology Research Center, Collage of Agriculture, Shiraz-Isfahan
RL Road, Km15, Shiraz, Fars 71441-65186, Iran
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CC ##Assembly-Data-START##
CC Assembly Method :: Vector NTI v. 9.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .1248
FT /organism="Bermuda grass southern mosaic virus"
FT /host="Cynodon dactylon"
FT /isolate="Andimeshk"
FT /mol_type="genomic RNA"
FT /country="Iran:Andimeshk"
FT /collection_date="2007"
FT /PCR_primers="fwd_name: bjpf1_forward, fwd_seq:
FT gatcttccagattatttggctgayg, rev_name: bjpr1b_reverse,
FT rev_seq: cggttaagtttcgctgaagtcc"
FT /db_xref="taxon:1285466"
FT CDS <1. .1014
FT /codon_start=1
FT /product="polyprotein"
FT /note="contains coat protein and NIb protein"
FT /protein_id="AGC94746.1"
FT /translation="DLPDYLADEVIDVKHQAGENVDAGQETEAQKEAKKKAAEEKKARE
FT TEAKRKQEAETKQKADEEARERQRVKEAADKKKAEDDAKKKAAEKPSGSGSAEKDKDVD
FT AGTLGSMTVPKLKAMSKKMRLPQAKGKNILHLDFLLQYKPQQQDLSNTRATKAEFDRWY
FT EAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVWTMMDGDEQRTFPLKPVIENAS
FT PTFRQIMHHFSDAAEAYIEYRNSTEKYMPRYGLQRNLTDFSLARYAFDFYEMSSRTPAR
FT AKEAHMQMKAAAVRGSNTRMFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQGH"
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SQ Sequence 1248 BP; 428 A; 235 C; 304 G; 281 T; 0 other;
kc107759 Length: 1248 29-JAN-2013 Type: N Check: 4306 ..
1 gatcttccag attatttggc tgacgaggtt atagatgtta aacatcaagc
51 tggtgagaat gttgatgctg gacaggaaac tgaagcacag aaagaagcaa
101 agaagaaagc ggctgaagag aagaaagcaa gagaaactga agcaaaacga
151 aagcaagagg ctgaaacaaa gcaaaaggca gatgaagaag ccagagaaag
201 acaaagagtc aaggaagcag ctgacaaaaa gaaagctgaa gatgatgcta
251 agaagaaagc tgctgagaag cccagtggga gtggatccgc agaaaaggac
301 aaagacgtgg atgctggaac tttgggttca atgacggtac ctaagcttaa
351 agctatgtcc aaaaagatgc gtttgccaca ggcaaaagga aagaacattc
401 tccatcttga ctttctcttg caatacaaac cacaacaaca agatttatca
451 aacacacgag caaccaaggc tgaatttgat agatggtacg aagcagtgca
501 gaaagaatac gaacttgatg atacacaaat gacagttgtc atgagtggat
551 taatggtttg gtgcattgaa aatggttgct caccgaacat caatggtgtc
601 tggactatga tggacggaga tgaacagaga acatttcctt taaaaccagt
651 tattgaaaat gcatctccaa ctttcagaca aattatgcac cactttagtg
701 atgcagctga agcatacatc gagtatagaa actcgacaga gaaatacatg
751 ccgagatatg gacttcagcg aaacttaacc gactttagcc ttgcacgcta
801 tgcatttgat ttttacgaga tgtcatctcg aactccagca cgtgcaaagg
851 aagcccacat gcagatgaag gccgcagcag ttcgtggttc aaacacacga
901 atgttcggtc ttgatgggaa tgtcggagag acccaagaaa acactgaacg
951 ccacacagct ggcgacgtta gtcgcaacat gcactccctt ttgggagttc
1001 agcaggggca ttaagacggg gtcgaacttt tacgcagtaa tttagtaata
1051 cataaataaa ctattgtggt gaggttctac ctcgttagtt ttatttatat
1101 attatgctat gtacctacta tgtctgcaag tgagtgaggt tacacctcga
1151 cacttatagt gggtactatt actagcttcg aatcacgaga cggacaatcc
1201 attgagtggt tctaccacga ggatgcagcg agtttcgtgg tgcgagac