Sequence of DPV Turnip curly top virus
Turnip curly top virus isolate IR:Lap:L2-P:Tur:12, complete genome.
ACC No: KC108895
Dated: 2012-12-23 | Length: 2980 | CRC: 1957438431
ID KC108895; SV 1; circular; genomic DNA; STD; VRL; 2980 BP.
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AC KC108895;
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DT 23-DEC-2012 (Rel. 115, Created)
DT 23-DEC-2012 (Rel. 115, Last updated, Version 1)
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DE Turnip curly top virus isolate IR:Lap:L2-P:Tur:12, complete genome.
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KW .
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OS Turnip curly top virus
OC Viruses; ssDNA viruses; Geminiviridae; unclassified Geminiviridae.
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RN [1]
RC Publication Status: Available-Online prior to print
RP 1-2980
RX PUBMED; 23225113.
RA Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA Varsani A.;
RT "Genetic diversity and host range studies of turnip curly top virus";
RL Virus Genes 0:0-0(2012).
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RN [2]
RP 1-2980
RA Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA Kraberger S.;
RT ;
RL Submitted (29-OCT-2012) to the INSDC.
RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL Kerman, Kerman 7616914111, Iran
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN 5.2.6 v. 5.2.6
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2980
FT /organism="Turnip curly top virus"
FT /host="Brassica rapa var. rapa"
FT /isolate="IR:Lap:L2-P:Tur:12"
FT /mol_type="genomic DNA"
FT /country="Iran:Lapouei, Shiraz, Fars"
FT /collected_by="M. Kamali"
FT /collection_date="2012"
FT /clone="L2-P"
FT /db_xref="taxon:859650"
FT CDS 236. .613
FT /codon_start=1
FT /product="V2"
FT /protein_id="AGA19509.1"
FT /translation="MIWRIAKDDKRVRAFRYKKRRFYSLSEYLLAPLATHLRLARILPE
FT KCWSVVPAYTDEAYSFLFMLKEETRTPFQILKDEWNVEFKEAEVALSRLRLSTEDTGEE
FT TGGEESPVQQSSPVQSSSCET"
FT CDS 468. .1298
FT /codon_start=1
FT /product="coat protein"
FT /note="V1"
FT /protein_id="AGA19510.1"
FT /translation="MSGTWSLKRPRWHSPGYDLAPKTPVKRPAVRRALFNNQAQFSRVA
FT ARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNI
FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT CDS complement(1295. .1717)
FT /codon_start=1
FT /product="C3"
FT /protein_id="AGA19511.1"
FT /translation="MSVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWDHQENGF
FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRSLTGHRFTTIFLKRLLFYLNNLGIIS
FT LNLVINGISHVLFEDFKFVESVINQEYRVAMKEEFY"
FT CDS complement(1422. .1850)
FT /codon_start=1
FT /product="C2"
FT /protein_id="AGA19512.1"
FT /translation="MKPLSPGVYKIQSSQQSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT ECGEGFTHRGTHNSSSINDWNIHTSSTKPVSSQTNIMGPPGERVLQHQITTPIQLQPTE
FT TTGITHGLDRIHGIGSSPEFDWTSIYDDFFEEITLLPK"
FT CDS complement(1738. .2853)
FT /codon_start=1
FT /product="Rep"
FT /note="C1"
FT /protein_id="AGA19513.1"
FT /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEDALLQLQAIQCPSTKKFI
FT RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY
FT IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP
FT SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL
FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS
FT WSLQNSVFTTIEEPLFNITSDQEVEDSTPTV"
FT CDS complement(2436. .2693)
FT /codon_start=1
FT /product="C4"
FT /protein_id="AGA19514.1"
FT /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNRA
FT PMSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR"
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SQ Sequence 2980 BP; 808 A; 523 C; 729 G; 920 T; 0 other;
kc108895 Length: 2980 23-DEC-2012 Type: N Check: 2684 ..
1 accggatggc ccaaaaaaaa tttttggcgc gtgttttgat ggtgacaggt
51 gcgtagtgga gaagccgcgc caaagtgaaa gcaaagacga ttagtcttgg
101 tcgtgtggtc ccaaaggtaa agtattaaag attggttatt gagtgcgatt
151 acacgtgtat ctgtactatt tgtctccgaa gctaagcttc ggctatataa
201 ttagcatcgg tattaggaat tgtgtatatt aaaaaatgat ttggagaatc
251 gcaaaagacg ataaacgggt tagggcgttt aggtataaaa aaagaaggtt
301 ttactcttta tcggagtatt tattggcccc tttggctaca catttacgac
351 tcgctcgtat tttaccagag aagtgttggt ccgtagttcc agcttatacc
401 gacgaggcgt atagttttct gtttatgtta aaagaagaaa cgcgaacgcc
451 gtttcaaata ttgaaagatg agtggaacgt ggagtttaaa gaggccgagg
501 tggcactctc caggctacga cttagcaccg aagacaccgg tgaagagacc
551 ggcggtgagg agagccctgt tcaacaatca agcccagttc agtcgagtag
601 ctgcgagacg tagatggtcg aagtttcctg ttcgaggtaa taaaccgtat
651 aggtatcgta agttaaaagc tagtgattat cagatctaca aggataagat
701 tggtggagat aatgggtgga cggtgacatt tagtggggac tgcactatgt
751 tgaataatta cgttagagga attggtaggg accagcgtga ctcggtgatg
801 actaagaccg cacatatgca ttttaatggg gtattgatgg ccaatgatgc
851 tttctgggaa gcgcctaatt atatgactat gtatagttgg attattcttg
901 ataatgatcc tggtggtaca tttccaaagc cctctgacat ttttgatatg
951 gagtataaag agtttccgtc catgtatgag gtcgccgaga gtgttaaatc
1001 tcggtttatt gttaagagaa agacggagca ttatttaagg tctaccggtg
1051 ttgcttttgg ggagaaacaa aattataagg cgcctaatgt tggtccggtt
1101 aagaaaccta tacgtatgaa gtttcgtaat atatggcagc cttccgagtg
1151 gaaggatacg gcgggaggaa aatacgagga tttgaagaaa ggggctttgt
1201 tatacgtatg tatttgtgat aacaaggcta ctcaattttc gtttaatttg
1251 aagggtcagt ggaccatgta tttcataaat agagatttaa tgtattaata
1301 aaactcttct ttcattgcaa cacggtactc ttgatttatt acagactcga
1351 caaacttgaa atcctcaaat aaaacatgac taataccatt tattacaagg
1401 ttaagggata taatccctag attatttagg tagaagagta atctcttcaa
1451 aaaaatcgtc gtaaatcgat gtccagtcaa actccggtga cgacccaata
1501 ccgtgaattc gatccaagcc atgtgtaatc ccagttgttt ccgtaggttg
1551 tagttgaatc ggagttgtaa tctgatgttg aagaacccgt tctcctggtg
1601 gtcccatgat attagtttga gatgaaacgg gtttggtact tgatgtatgt
1651 atgttccaat cgttgattga cgatgagtta tgggttcccc tgtgcgtaaa
1701 tccctcacca cactcatgat gtattgtgaa tttgcactta cacggtagga
1751 gtactgtctt cgacttcttg atcactcgtg atattgaaga gaggttcctc
1801 gattgttgtg aagactgaat tttgtaaact ccaggactta agggcttcat
1851 tctctggttt gtcgaggaag ttttgatatg aggctccgtc tcctgggttg
1901 cataaaatga tcgaagggat tccccctttt ataatacgtg gcttcccgta
1951 tttgaggttt gtctgccact ccttttgcgc accaattaaa tgcttccagt
2001 gcttcatctt tagataatgg gggtccacgt catcaatcac gttgtaagaa
2051 acgtcgtcgt tgtatacttt agtggagaag tcgagatgac cggttatgta
2101 attatgagat ccaagggatc ttgcccacag ggttttacct gttcttgaag
2151 gaccttctat tattattgat ttaggtctgt cgatagatgg aattacctta
2201 tatttactcg gccccgcagg ggaatttgac tcctccagaa aaaaattaga
2251 ctctaaccaa tccaaaatat catctgttaa gacgaattgg gtatggttgt
2301 atttggggac gtatcctaca ggaggaggat tgaatatggc cgctaagttt
2351 ggtttcaggt tatggaattg aaagatgtaa tctttaggga gtttctccct
2401 aatgacagcc aaagcggctt cagcggtacc tgagtttaac gcctctgcac
2451 atgcatcatt agccgtctgt tgacctcctc gtgcagatcg tgcatcgatc
2501 tgaaattcac cccagtcgat gtaatctccg tccttctcga tataggactt
2551 gacatcggag ctcgatttag ctccctgaat atttgggtgg cagatgcgac
2601 cggaacctcc atctcgtaaa tcgaaatgac gggggttata gagctggatt
2651 tttccttcga actggataag cacatggaga tgaggttccc cattatcgtg
2701 cctttctcta caaattcgta tgaatttctt ggttgaagga cactgtatag
2751 cttgtagttg cagaagagcg tcttctttag ttagatggca gtgagggtat
2801 gttaggaaaa tatttttagc atgaatgcga tattgcctcg gagtccttgg
2851 cattttcggt atttgtagaa atgaattggg gttacgctca aactctattg
2901 tatcggggtt actggggttg tatatatagt gtggattgta gaaggcctct
2951 tgctcacatt tgggccatcc gtttaatatt