Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate HB-wheat segment S6, complete sequence.
ACC No: KC134294
Dated: 2013-01-31 | Length: 2645 | CRC: -862347633
ID KC134294; SV 1; linear; genomic RNA; STD; VRL; 2645 BP.
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AC KC134294;
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DT 31-JAN-2013 (Rel. 115, Created)
DT 31-JAN-2013 (Rel. 115, Last updated, Version 1)
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DE Rice black streaked dwarf virus isolate HB-wheat segment S6, complete
DE sequence.
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KW .
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OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC Fijivirus group 2.
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RN [1]
RP 1-2645
RA Li Y., Fan Z.;
RT "Complete genomic sequence of Rice black streaked dwarf virus isolated from
RT wheat";
RL Unpublished.
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RN [2]
RP 1-2645
RA Li Y., Fan Z.;
RT ;
RL Submitted (02-NOV-2012) to the INSDC.
RL Plant Pathology, China Agricultural University, Yuanmingyuan West 2,
RL Haidian District, Beijing 100193, China
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CC Genbank Accession Numbers KC134289-KC134298 represent the complete
CC genome of Rice black streaked dwarf virus isolate HB-wheat.
CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 6.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2645
FT /organism="Rice black streaked dwarf virus"
FT /segment="S6"
FT /host="wheat"
FT /lab_host="maize"
FT /isolate="HB-wheat"
FT /mol_type="genomic RNA"
FT /country="China:Hebei Province, Baoding"
FT /collection_date="20-Mar-2012"
FT /db_xref="taxon:10990"
FT CDS 82. .2460
FT /codon_start=1
FT /product="P6"
FT /protein_id="AFX68411.1"
FT /translation="MSAHLTNLALLKKRIQRRNNTEQAKDEPKESPPIHPIEKPLESSV
FT TSESSNSKKRYARPSNKASPQPNSSESSNETKLLHNLISSASNSSVVMKPNSDVLNLSK
FT TQTILPSLVVNTTCQLRMKNLDNWKGFVLCHPSSPQANVSATLYTGNKLFVVFEKKNVL
FT NDDSEFNLMLKERVFTYLDAATFKPKNKDFMVSLYNAPSNILIVDSDLEFDDLSNAKIC
FT FSSTEMSGLTSLHKRMIKFSFWPSNILMPHLSELSNYFNDFKLRHLKDIEIEASDVQSS
FT LFIVSNNKFSEQSENVLQFIDAQPNSQLLVNKINDMSERFSAMPDGTHFMIGTVPAQSE
FT FIDDKKKNLFGSNQVVLMVNPVNVLFDHKQLYSLLFSYLNKFVMQASIVQVFTTDLINH
FT ADLFSIAFSTIKCFYDSVSCTLINHVLDSDSQNENKVLLSVNDLTDEVADFIPSSVEIA
FT SDNETDFKRVENEIKSLINFETHQQTPSTSQSLENRATQQSWVDVIEKSNSIDEKESSN
FT NFQSVIDKMSYEDFLTNVKLVEFAKRYSAETDDLHRATVDLARMSEENGQLQVSLRQAK
FT DQIAKYEAEIADIIKQRDCFDLQITELNDAYCSLLKEKDEIKIENEMLKEQLKEANHVV
FT VERTSRLNEVIDELENIKTSANETNDESDEEQQESNGFRLFGECIDKVRALKEKYPHLY
FT SGVDANFGDITSLLKMIMIKIDSIMSLCDADVTVSENQWNAYGLCSLAPTSDDDTNFPM
FT LSVKQVGLINVQITNFTNVVYDAFFYNLFIKFLWQLSSE"
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SQ Sequence 2645 BP; 832 A; 542 C; 473 G; 798 T; 0 other;
kc134294 Length: 2645 31-JAN-2013 Type: N Check: 3861 ..
1 aagttttttg agtctgagat actgttaccc attgcgaccc tgagaacgag
51 ttcaacagaa tctcacgccc aaaaaacaac gatgtctgcc cacctgacca
101 atttagccct tctgaaaaaa cgaatccaaa gacgaaacaa caccgagcaa
151 gcgaaagatg aaccaaaaga aagcccgccg atccacccga tcgaaaagcc
201 tctcgaatca tctgtcactt ctgagtcttc taattcgaaa aaacgctacg
251 cacgtccatc taacaaagcc tctcctcaac ctaactcttc cgaatcatct
301 aatgaaacta aactgcttca caatttgatt tcttctgcgt caaattcctc
351 cgtggtgatg aaacctaatt cagacgtact caacctgtct aaaactcaaa
401 ctatccttcc ttctttagtt gtgaatacca cttgtcagct acgaatgaaa
451 aatctcgata attggaaagg ttttgtcctc tgtcatccta gctctccaca
501 agccaacgtt tctgctactt tgtacactgg taataaactt tttgttgtgt
551 ttgaaaagaa aaatgtgtta aacgatgatt ctgaattcaa tctaatgttg
601 aaggaacgcg tatttactta tcttgatgct gctactttca agcccaaaaa
651 caaagatttc atggtttcat tgtacaacgc tccttctaac atcctcattg
701 tagacagtga tttggaattt gatgacctga gcaacgctaa aatctgcttt
751 tcttctactg aaatgtctgg actaacctca ttgcacaaga gaatgatcaa
801 gtttagtttc tggccaagta acattttgat gcctcatttg tctgaacttt
851 caaattattt caatgatttc aaacttcgtc atcttaaaga tatcgaaatt
901 gaagcttctg atgtccagtc ttcattgttc attgtgtcca ataacaaatt
951 ttctgaacaa agcgaaaacg tgctccaatt cattgacgcg caaccaaact
1001 ctcaactgct tgttaacaaa atcaacgata tgagtgaaag atttagtgca
1051 atgcctgatg gtactcattt tatgattgga actgttcctg ctcaatcgga
1101 attcattgat gacaagaaga aaaacctttt tggatcgaat caagtagtac
1151 tgatggttaa tcccgtgaat gttctgtttg atcacaaaca actgtattct
1201 ttgctttttt cgtatttaaa caaattcgtc atgcaagcat caatagttca
1251 agtattcact accgatttga ttaatcatgc cgatctgttc tccattgctt
1301 ttagcaccat caagtgcttc tacgattctg taagctgcac actcatcaat
1351 cacgttcttg attccgattc tcagaatgaa aataaagttt tattatccgt
1401 gaacgatcta actgacgaag tagctgattt tatcccatcg agtgtcgaaa
1451 ttgcgagtga caatgaaacg gattttaaac gtgttgaaaa cgagatcaaa
1501 tctttgatca atttcgaaac ccatcagcaa acgccatcta cgtcccaatc
1551 tttagaaaat cgcgctactc aacagtcttg ggttgatgta attgagaaga
1601 gtaattcgat tgatgaaaaa gaatcatcta acaacttcca gtccgtgatt
1651 gacaaaatgt catatgaaga ttttctcact aatgtcaaac ttgttgaatt
1701 tgcgaagcgt tactctgctg aaactgatga tttacacagg gcaactgtcg
1751 atttagctcg tatgtcggaa gagaatggtc aactacaggt atccttgaga
1801 caagctaaag accagattgc caaatacgaa gcagaaatag cggatattat
1851 caagcagaga gactgttttg accttcagat aacggagttg aacgacgctt
1901 actgctcttt gctaaaagag aaggacgaaa tcaaaatcga aaacgaaatg
1951 ttgaaggaac agttgaaaga agcgaatcat gttgttgtcg aacgaacctc
2001 ccgtctcaac gaagttatcg atgaattaga gaatattaaa acatctgcta
2051 atgaaacgaa tgatgaatcc gatgaggaac aacaagaaag taatggattt
2101 agactgtttg gtgaatgtat tgacaaagta cgtgccctga aggaaaagta
2151 tccccatttg tattcaggag tagatgctaa ttttggagat atcacttcct
2201 tgttgaaaat gatcatgatc aagattgata gtatcatgtc tctttgtgat
2251 gccgacgtta ctgtttctga aaatcaatgg aacgcttatg gtttgtgcag
2301 tttggcccca acttctgatg atgacaccaa tttccctatg ctatccgtta
2351 aacaggttgg tttgataaac gtgcaaatca ctaatttcac gaacgttgtg
2401 tacgacgctt tcttttacaa tctgttcatc aaattcctct ggcaactaag
2451 ctctgagtaa atgaatcatt cttatgattg acatctcgca ttaacatctg
2501 cgtattaaca actagctgat ttgagtaata tgaattccaa ccgtaaagag
2551 atctcgtgtt gaattggatt atcggtaatc gtaatggtaa gtcagttttc
2601 tctttcgtca ccttgcccgg caagagactc aaatcagctg atgtc