Sequence of DPV Papaya ringspot virus
Papaya ringspot virus P isolate MP helper component proteinase gene, partial cds.
ACC No: KC149503
Dated: 2013-02-12 | Length: 1370 | CRC: 568053739
ID KC149503; SV 1; linear; genomic RNA; STD; VRL; 1370 BP.
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AC KC149503;
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DT 12-FEB-2013 (Rel. 115, Created)
DT 12-FEB-2013 (Rel. 115, Last updated, Version 1)
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DE Papaya ringspot virus P isolate MP helper component proteinase gene,
DE partial cds.
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KW .
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OS Papaya ringspot virus P
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1370
RA Basavaraj Y.B., Prachi S., Reetika K., Jain R.K.;
RT "Studies on genetic diversity of PRSV-P and -W populations from different
RT hosts and locations in India";
RL Unpublished.
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RN [2]
RP 1-1370
RA Basavaraj Y.B., Prachi S., Reetika K., Jain R.K.;
RT ;
RL Submitted (09-NOV-2012) to the INSDC.
RL Division of Plant Pathology, Advanced Centre for Plant Virology, Indian
RL Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL India
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FH Key Location/Qualifiers
FH
FT source 1. .1370
FT /organism="Papaya ringspot virus P"
FT /host="Carica papaya"
FT /isolate="MP"
FT /mol_type="genomic RNA"
FT /country="India:Madya Pradesh, Indore"
FT /isolation_source="leaf showing blistering and leaf
FT distortion symptoms"
FT /collected_by="Basavaraj YB"
FT /collection_date="25-Jun-2012"
FT /note="pathotype P"
FT /db_xref="taxon:12206"
FT CDS <1. .>1370
FT /codon_start=1
FT /product="helper component proteinase"
FT /note="HCpro"
FT /protein_id="AGE32246.1"
FT /translation="NDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATII
FT LFPCHKITCNTCMSKVKGRVIDEVGEELNCELERLRETLSSYGGSFGHVSTLLDQLNKV
FT LNARNMNDEAFKEIAKKIDAKKESPWTHMTAINNTLIKGSLATGYEFERASDNLREIVR
FT WHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDRNGNFLWGERQYHAKRFFANY
FT FEKIDHSKGYEYYSQRQNPNGVRKIAIGNLIFSTNLERFRQQMVEHHIDQGPITRECIA
FT LRNNNYVHVCSCVTLDDGTPAISELKIPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKK
FT GYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLIIFHPDAA
FT NAELPRILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFAREPLDSEMKHYIVG"
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SQ Sequence 1370 BP; 438 A; 253 C; 311 G; 368 T; 0 other;
kc149503 Length: 1370 12-FEB-2013 Type: N Check: 9118 ..
1 aatgacgtgg ctgaaaaatt ctggctcggt ttcaataggg cttttctgcg
51 gcacagaaaa ccaacggacc acacttgcac gtctgacatg gacgttacaa
101 tgtgtgggga agttgcggct ctcgcaacaa taatcctgtt tccgtgtcat
151 aaaataactt gcaatacttg catgagcaaa gtaaagggaa gagttattga
201 cgaagtcggt gaggaattga attgtgaact tgaacgcttg cgtgaaactc
251 tttcgtcata tggaggatca ttcgggcatg tctcaacatt gcttgatcaa
301 ctgaacaaag ttttgaatgc gcggaacatg aatgatgaag cttttaaaga
351 aattgctaag aaaattgatg caaagaaaga gagtccttgg actcacatga
401 cagctattaa caacacgctc atcaaaggtt cgctagcaac tggctatgaa
451 tttgaaagag cgtctgataa tcttcgagag attgtgagat ggcatctcaa
501 aaggacagag tcaataaaag ctggcagtgt tgaaagtttc agaaataagc
551 gttctggaaa ggcccacttc aacccagctc ttacatgtga taatcaattg
601 gataggaatg gcaatttctt atggggtgag aggcaatacc acgccaaaag
651 attctttgcc aactattttg aaaagattga tcacagtaag ggttatgagt
701 actacagtca gcgccaaaat ccaaatggtg tcaggaaaat agccattggc
751 aatttgatat tttcaacaaa tttggaaagg tttcggcagc aaatggttga
801 acatcacatt gatcaaggac caattactcg cgaatgcatt gcattacgca
851 ataacaatta tgttcatgta tgtagctgcg tgactttaga tgatggaacc
901 ccagcaataa gtgagttgaa gattcctacc aagaaccaca tagttcttgg
951 taactctggt gatcctaagt acgttgactt gccgactctt gagtctgatt
1001 caatgtacat agccaagaaa ggttactgct acatgaacat ctttttagcg
1051 atgctcataa acatacctga gaatgaggca aaggacttta caaagagggt
1101 tcgtgacctt gtgggttcaa aacttggaga atggccaacg atgttagatg
1151 tcgcaacatg cgcaaaccag ttgataattt ttcatcctga tgcagccaat
1201 gcagaattgc cgcgaatttt agtggatcac cgacagaaaa caatgcatgt
1251 cattgactct tttgggtctg tggattctgg atatcatata ttaaaggcaa
1301 acacagttaa tcagctgatc caatttgcta gggaaccact tgatagtgaa
1351 atgaagcact acattgtcgg