Sequence of DPV Papaya ringspot virus

Papaya ringspot virus P isolate WB-1 helper component proteinase gene, partial cds.

ACC No: KC149504

Dated: 2013-02-12 | Length: 1370 | CRC: -484834298

                
ID   KC149504; SV 1; linear; genomic RNA; STD; VRL; 1370 BP.
XX
AC   KC149504;
XX
DT   12-FEB-2013 (Rel. 115, Created)
DT   12-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Papaya ringspot virus P isolate WB-1 helper component proteinase gene,
DE   partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus P
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1370
RA   Basavaraj Y.B., Jain R.K.;
RT   "Studies on genetic diversity of PRSV-P and -W populations from different
RT   hosts and locations in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1370
RA   Basavaraj Y.B., Jain R.K.;
RT   ;
RL   Submitted (09-NOV-2012) to the INSDC.
RL   Division of Plant Pathology, Advanced Centre for Plant Virology, Indian
RL   Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL   India
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1370
FT                   /organism="Papaya ringspot virus P"
FT                   /host="Carica papaya"
FT                   /isolate="WB-1"
FT                   /mol_type="genomic RNA"
FT                   /country="India:West Bengal"
FT                   /isolation_source="leaf showing blistering and shoe string
FT                   symptom"
FT                   /collected_by="Jain RK"
FT                   /collection_date="27-Jul-2011"
FT                   /note="pathotype P"
FT                   /db_xref="taxon:12206"
FT   CDS             <1. .>1370
FT                   /codon_start=1
FT                   /product="helper component proteinase"
FT                   /note="HCpro"
FT                   /protein_id="AGE32247.1"
FT                   /translation="NDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATII
FT                   LFPCHKITCNTCMSKVKGRVIDEVGEDLNCELERLRETLSSYGGSFGHVSTLLDQLNRV
FT                   LNARNTNDGAFKEIAKKIDEKKESPWTHMTVINNTLIKGSLAIGYEFERASDSLREIVR
FT                   WHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDKNGNFLWGERQYHAKRFFANY
FT                   FEKIDHSKGYEHYSQRQNPNGVRKVAIGNLIFSTNLERFRQQVVEHHIDQGPITRECIA
FT                   LRNNNYVHVCSCVTLDDGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKK
FT                   GYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLTIFHPDAA
FT                   NAELPRILVDHRQKTMHVIDSFGSIDSGYHILKANTVNQLIQFAREPLDSEMKHYIVG"
XX
SQ   Sequence 1370 BP; 433 A; 273 C; 316 G; 348 T; 0 other;

kc149504 Length: 1370  12-FEB-2013  Type: N  Check: 238  ..

       1  aatgacgtgg ctgaaaaatt ctggctcggt tttaataggg cttttctgcg
      51  gcacagaaaa ccaacagatc acacttgcac gtctgacatg gacgttacaa
     101  tgtgtgggga ggtggcggct cttgcaacta taatcctgtt tccgtgtcac
     151  aaaataacgt gcaatacttg catgagcaaa gtaaagggaa gggttattga
     201  cgaagtcggt gaggatttga attgtgaact cgaacgcttg cgcgaaactc
     251  tttcgtcata tggaggatca tttgggcatg tctcaacatt acttgatcaa
     301  ctgaacagag tcctgaacgc gcggaacacg aatgatggag cttttaaaga
     351  aattgctaag aaaattgatg aaaagaagga gagtccttgg actcacatga
     401  cagttattaa caacacgctc atcaaaggtt cgctagcaat tggttacgaa
     451  tttgaaagag cgtctgacag tcttcgggag attgtgagat ggcatctcaa
     501  aaggacagag tcaataaaag ctggcagcgt tgaaagcttc agaaataagc
     551  gttctggaaa agcccacttc aacccagctc ttacatgtga taatcagttg
     601  gacaagaatg gcaatttctt atggggtgag aggcaatatc acgccaaaag
     651  attctttgcc aactattttg agaaaattga tcacagtaag ggttacgagc
     701  actacagtca acgccagaat ccaaatggtg tcagaaaagt agccattggc
     751  aacttgatat tttcaacaaa tttggaaagg tttcggcagc aagtggttga
     801  acaccacatt gatcaaggac cgatcactcg cgaatgcatt gcgttacgca
     851  ataacaatta tgttcatgta tgtagctgcg taactttgga tgatgggacc
     901  ccagcaacaa gtgagttgaa gactcctacc aaaaaccata tcgttcttgg
     951  taattctggt gatcctaagt acgttgactt accaactctt gagtctgatt
    1001  caatgtacat agccaagaaa ggttactgct acatgaacat ctttttagcg
    1051  atgctcataa acatacctga gaatgaggca aaggacttca cgaagagggt
    1101  tcgtgacctt gtgggttcaa aactcggaga atggccaacg atgttagatg
    1151  tcgcaacatg cgcaaatcag ctaacaatct ttcaccctga cgcagccaat
    1201  gcagaattgc cacgaatttt agtggatcac cggcagaaaa caatgcatgt
    1251  catcgattct tttggttcca tagattctgg ataccatata ttaaaggcaa
    1301  acacggtcaa tcagctgatc caattcgcaa gggaaccact cgatagtgaa
    1351  atgaagcact acattgtcgg