Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-4 segment M, complete sequence.
ACC No: KC261948
Dated: 2013-06-04 | Length: 4781 | CRC: -493419095
ID KC261948; SV 1; linear; genomic RNA; STD; VRL; 4781 BP.
XX
AC KC261948;
XX
DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Tomato spotted wilt virus isolate TSWV-4 segment M, complete sequence.
XX
KW .
XX
OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-4781
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
XX
RN [2]
RP 1-4781
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
XX
CC GenBank Accession Numbers KC261947-KC261949 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-4.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .4781
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="pepper"
FT /isolate="TSWV-4"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Sep-2009"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="NSm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="NSm"
FT /product="nonstructural protein"
FT /protein_id="AGM53756.1"
FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLSKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALIDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCNQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEGEGISDSVAQLSFDEI"
FT gene complement(1290. .4697)
FT /gene="Gn-Gc"
FT CDS complement(1290. .4697)
FT /codon_start=1
FT /gene="Gn-Gc"
FT /product="glycoprotein precursor"
FT /protein_id="AGM53757.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT
FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA
FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTITESIFGTNIVIEG
FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFKNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGVTIGELIAHGPDGHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL
FT NCNGCLLCGQGLSCILEFFSDLTLSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD
FT DDSEIKAPMLMKDTMTRRRPPMDFSQLV"
XX
SQ Sequence 4781 BP; 1534 A; 845 C; 853 G; 1549 T; 0 other;
kc261948 Length: 4781 04-JUN-2013 Type: N Check: 1646 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactt ttttcagtaa taaggggtct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac tatctaaaca taatggtaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggc tatgatcttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg gaagcagaac gctaataagg tcatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tctaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacaggaaa acttgtggtt
551 gccctaatcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg
601 tcagggaaca ataactgatc ctatatgttt tgtcttttat ctgaactggt
651 ctattccaaa aataaacaac actccagaaa actgctgtca gctgcatttg
701 atgtgcaacc aagaatacaa gaaaggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtgtggt tatacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca
901 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg
951 aagaagaagg ggaagggatt tctgatagtg ttgctcagtt atcctttgat
1001 gaaatatagt acttttaata ccacttgttt aagcttaaat ttctgttaat
1051 tttgcatttt aaaatcaaaa aacaaaacaa aacaaaaaac aaaaaaggaa
1101 agcaaaaaac aaaaaaatca aaaaaggaaa caaaaacaaa ataaggctga
1151 aaagccaaac tttggtccga agactctttt tgttgttttt tgtttatttg
1201 tattttttgt ttgtttttta tttattttat atatacataa tctgactaat
1251 gtagaggatt gaatcaaatt tagcctgtga caagcagcct cagacaagtt
1301 gagagaaatc cataggtggc cttcgtcttg tcattgtatc tttcattaac
1351 ataggggctt tgatctcgga atcatcatca tcctctatct tggatctaga
1401 tttataagat tcattcttga catatccttt acaaatggtt gttagaatag
1451 aacagaaata aattgcaagg aaaatgaatg caataagcaa tatcactctg
1501 atagtatcaa aaaacgagcc aaaataactt gcaatgaaat tgaatgggct
1551 cttaatataa tcccagaagc cccatgctga agaatcagaa ttatattgtt
1601 gttcttcatg agcatactca tcattttgat ctattatgtt ctctggttct
1651 tctacaacaa cattattgac cagaacctcc acagaaatat ctggattgcc
1701 ttctggatac aacgtcattt tcttcttgtc cggattagca gaacaaaaca
1751 ttgttatgtt gtatttattt gacccttttt taacagccag ttgataagta
1801 gatagagagc aagcatctat agaaattgaa gtagaaagtg tcaaatccga
1851 gaaaaattct aaaatgcaag ataaaccttg accgcataga agacagccgt
1901 tgcaatttaa tcttgttgaa gttatggaag gtctcttagg agcaacttta
1951 aaaagatcag atggaagatc aacgacaatc ttgagtttgc ctaaactgaa
2001 agctttttcc aagaaaaaac tagagaaatc tttgaaacta acaggaatat
2051 ctgatatttg ctctaaacca gatctaaatc tgtatgtatc atatccgcat
2101 gttttaatag tgattgattt tttccctatt gctgcacaat cccaagacat
2151 gtcatctcct tctagagttt tcttagtaaa aatgggcact ccatcatgag
2201 tcaattgtgg gtgaccaaac attttgacag gatcattcaa gtttgcaata
2251 tttccagaat aaatatggcc gtcaggtcca tgagctatca gttcacctat
2301 agtgacaccg tcattgtgca aatctgcttg tatatcagct tgaaacaagg
2351 cattttcata aggaacctct tcagtgatcc ttgagcactg acctcctaaa
2401 ataccagaaa tacaaacatc tgccactatg gttgatttta gcactgaata
2451 aattctgtat gatttgtcca tgtcatagat attccgacag aatccacatg
2501 tagcaccttc attgattgca aaacaccaag cttcttcaca tccccaataa
2551 gaagttggtg ttatacaaaa atcttggaaa cctgttaaag cttgattttt
2601 tctgcaagtg tcacagtttc ctgtacaagt tgaataaaaa tctgtgtgag
2651 tgctttggat aggagctgtt gtgtattttt ctgacacttc ataatgaatt
2701 cccacacttt tgatataaat cacaaatttt ttggctgttt ccgaggtttt
2751 atcattcaac atgaatatag tccctcctcc tcctaaaaga gattgttcta
2801 tcatgtatct atatttcccg tctacaacag aatcaaagat caatgattgt
2851 ctaggcagaa tgttctctgg tatgcttgtt tcatttttgt ttagagagtc
2901 tcctgcaatc attccagaaa ttttgtctgt acgattataa gaatctatta
2951 taccattcct caatctctta gcttcataca gaccaactga tgttaaccct
3001 aaagagcttc ctgtataatc tgaaaatccg ttatacaaag gtttgttttt
3051 aaataagtct aggtattcgc aacctaatct gcattttata agattgtcaa
3101 tagatgggtg tgcaacgcaa ttctggttct ctatgcaatc attaggacct
3151 tctataacaa tgttagtgcc aaagatactt tctgtaatcg tatcttcttt
3201 tacattacag taacattgat ctttttcagg gcatttttca aatttgcttg
3251 taaccaaaaa cggacagcct ggaacataaa aacatccact taaacattgg
3301 gtagtttgag ccatagacat gggcatttga gacaaaatga ccaaacctat
3351 taagatttca gtcacaaatt tcagcaaact gaagctcagc ttagtgttca
3401 ctattagatg gaaccattcc atgctagtcc acttatgttt gttgtagtca
3451 tgatctgttt ctttggacaa tatgggacac tctgaagaat gttcttttga
3501 agctttgctt ttgttgcaga tgcaaatttt agtacattca tgtgtgatta
3551 tgcacaaatt gccacagtta gaacatttaa atggaaaata tttccataag
3601 cagtttatga gcaacaaaat agggtatgtg atcaagccta taagatcata
3651 ccagagaaag aggggtttgg ttgtcttgtt tactaaccac cggataggga
3701 aatagatcaa caaagctatc aatattaatc ttatccaaga aaaattgatg
3751 caggctgttt gtttataaat gctttttgaa tatttgatta tgcaatctct
3801 aactcttttg tttgtttttg gtattttagc tgatttgtca ccgcacaaga
3851 gattgtgctc accgtccagc atttcctcag taaaagtgat gcttgctgat
3901 ccagaaaaag atatgacctt gtgttccaca ttttcaccag gcttttttat
3951 caaataaccc atgatcttct cagggctagt gatgctaaca gtatagggat
4001 tagcaaagtt tgatttagtt attttgcagt cgccagataa cttcacagtt
4051 tgtaatgata ctgttccatt agtagggtac gagttataag ttataggata
4101 attatcttgt gtcaggcttt ctgaaatgaa gaattttgtt ccaactgaaa
4151 aatgcctttt gttgtcaagt ttggtaatgg gaataaccgg gactttagag
4201 aatctttttg gcagatttaa agaattgtca catttttcta aaccttctgc
4251 tgaatcagaa acacaggaat atatgacacc attattttcc acttgataat
4301 aaacattata agtggatatc ccttttatct cacattttaa tgaagaagca
4351 ttcaagcagt tgttgggaag atccgagaca gagattgttt tttgcgtagt
4401 tgattcagca aaaataggga tggttgattc ttcttctcgt atctggcggg
4451 ttccaggagt ctgagattct agcatcagat tagttaaagt ctccaagata
4501 gccttgcgct gaattgatgc agcagttggt acttcattct cagcagaatc
4551 atcataaacc tcaggatggt ctccacgaat tatttctact ttggcatctg
4601 tggctctgaa aatcaagaat gccaacaaga cagaactcag ggcaattgtg
4651 aaaagactca cttttaccac tagttctagt agttttaaaa ttctcatctt
4701 agacgtctgc tcagattata atggttatat gattaatttc aagatgtctg
4751 gattaaggtt tttgtttgca ctgattgctc t