Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-4 segment S, complete sequence.
ACC No: KC261949
Dated: 2013-06-04 | Length: 2971 | CRC: -1087601078
ID KC261949; SV 1; linear; genomic RNA; STD; VRL; 2971 BP.
XX
AC KC261949;
XX
DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Tomato spotted wilt virus isolate TSWV-4 segment S, complete sequence.
XX
KW .
XX
OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-2971
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
XX
RN [2]
RP 1-2971
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
XX
CC GenBank Accession Numbers KC261947-KC261949 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-4.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .2971
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /host="pepper"
FT /isolate="TSWV-4"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Sep-2009"
FT /db_xref="taxon:11613"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /gene="NSs"
FT /product="nonstructural protein"
FT /protein_id="AGM53754.1"
FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININGSVLALSVCSNT
FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDEINKTFYLSI
FT ACIPNHNSVETALNISVICKHQLPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELIPGKLDLGERTLNYSEDICKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKGSKI
FT SEAYASGSK"
FT gene complement(2044. .2820)
FT /gene="N"
FT CDS complement(2044. .2820)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="AGM53755.1"
FT /translation="MSKVKLTKENIVALLTQNKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAILAELA"
XX
SQ Sequence 2971 BP; 951 A; 547 C; 468 G; 1005 T; 0 other;
kc261949 Length: 2971 04-JUN-2013 Type: N Check: 1596 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaaaagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctccact agttcaaacc cagttgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccttgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat caatggctct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacca acggagtgaa acatcaaggt catttgaaag ttttgtctcc
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa
601 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc
651 ctaacagaaa tgtccatgaa tggctgtact gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcag gcttttgtaa
801 aagcttccac tgattctcat ttcaaactga gcctctggct aagagttcca
851 aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga
901 tgaaataaac aaaacatttt atttatctat tgcttgcatt ccaaaccata
951 acagtgttga gacagcttta aacatttctg ttatttgcaa gcatcagctc
1001 ccaatccgta aatgtcaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccaaagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct
1201 aattcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag
1251 atatctgcaa aaggaaatat ttcctgtcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatgtc ttacttagac agcatccaaa tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctcca caatctgttt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 ggatctaaga tctcagaagc atatgcttca ggatcaaaat aatcttgctg
1501 tgtccagctt ttcctaatta tgttgtattt attttctttc tttacttata
1551 attgtttctc tattttgtta tttcttttga atttctcctg tttaatagaa
1601 accataaaaa taaaataaaa atagaaataa aaatcaaaat gaaacaaaaa
1651 tcaaaaaatg aacaaaaatc aaacaaaaat caaaaaatga aataaaaaca
1701 acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa agggacaatt
1751 ttggccaaac gggttttgtt tttgtttttt gttttttgtt ttttgttttt
1801 tattttattt ttatttttat ttatttattt tattttattt ttatttttat
1851 tttttatttt attttcattt tatgtttttt gttgtttttg ttattttgtt
1901 tattattaag cacaacacac agaaagcaaa ctttaattaa acacacttat
1951 tttaaattaa cacactaagc aagcacaagc aataaagata aagaaagctt
2001 tatatattta taggcttttt tataatttaa cttacagctg cttttaagca
2051 agttctgcaa gtattgcctg ttttttaacc ccgaacattt catagaactt
2101 gttaagagtt tcactgtaat gttccatagc aatacttcct ttagcattag
2151 gattgctgga gctaagtata gcagcatact ctttcccttt cttcacctga
2201 tcttcattca tttcaaatgc tttgcttttt agcacagtgc aaacttttcc
2251 tagggcttcc ctggtgtcat acttctttgg atcgatcccg aggtctttgt
2301 attttgcatc ctgatatata gccaagacaa cactgatcat ctcaaagcta
2351 tcaactgaag caataagagg taagctacct cccagcatta tggcaagcct
2401 cacagacttt gcatcatcaa gaggtaatcc ataggcttga atcagagggt
2451 gagaagcaat cttagatttg atagtattga gattctcaga attcccagtt
2501 tcctcgacaa gcctgaccct gatcaagcta tcaagccttc tgaaggtcat
2551 gtcggtggct ccaatcctgt ctgaagtttt ctttatggta attttaccaa
2601 aagtaaaatc actttgctta ataaccttca ttatactctg acgattcttc
2651 aggaatgtca gacatgaaat aatgctcatc ttcttgatct ggtcaaggtt
2701 ttccagacaa aaagtcttga agttgaatgc taccagattc tgatcttcct
2751 caaattcaag atctttgttt tgtgtcaaca aagcaacaat gttttcctta
2801 gtgagcttaa ccttagacat gatgatcgta gaagttgtta tatgctttga
2851 ccgtatgtaa ttcaaggtgc gaaagtacaa ctctgtattc cgcagtcgtt
2901 tcttagggtt ttaatgtgat gatttgtaag actgagtgtt aaggtttgaa
2951 taaaattgac acaattgctc t