Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-6 segment M, complete sequence.
ACC No: KC261954
Dated: 2013-06-04 | Length: 4786 | CRC: -375307434
ID KC261954; SV 1; linear; genomic RNA; STD; VRL; 4786 BP.
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AC KC261954;
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DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate TSWV-6 segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-4786
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
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RN [2]
RP 1-4786
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
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CC GenBank Accession Numbers KC261953-KC261955 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-6.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .4786
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="Stellaria media"
FT /isolate="TSWV-6"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Dec-2009"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="NSm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="NSm"
FT /product="nonstructural protein"
FT /protein_id="AGM53746.1"
FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT gene complement(1295. .4702)
FT /gene="Gn-Gc"
FT CDS complement(1295. .4702)
FT /codon_start=1
FT /gene="Gn-Gc"
FT /product="glycoprotein precursor"
FT /protein_id="AGM53747.1"
FT /translation="MRFLKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHL
FT EVYDDSAENEVLTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT
FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECAKICICNKSKA
FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG
FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTKL
FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVPVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD
FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4786 BP; 1557 A; 850 C; 839 G; 1540 T; 0 other;
kc261954 Length: 4786 04-JUN-2013 Type: N Check: 4834 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactt ttttcagtaa taaggggtct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac tagctaaaca taatggtaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg gaagcagaac gctaataagg tcatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tctaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacaggaaa acttgtggtt
551 gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg
601 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt
651 ctattccaaa aataaacaac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaagggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtgtggt tatacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca
901 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagc acttttaata ccacttattt aagcttaaat ttctgttaat
1051 tttgcatttt taaatcaaaa aacaaaacaa aaacaaaaaa caaaaaaaga
1101 aaaaacaaaa aacaaaaaaa tcaaaaaaag aaaaaacaaa aacaaataag
1151 gctgaaaagc caaactttgg tccgaagact ctttttgttg ttttttgttt
1201 atttgtattt tttgtttgtt ttttgtttat tttatatata cataatctga
1251 ctaatgtaga gaattgaatc aaatttagcc tgtgacaagc agcctcagac
1301 aaggtgagag aaatccatag gtggccttcg tcttgtcatt gtatctttca
1351 ttaacatagg ggctttgatc tcagaatcat catcatcctc tatcttggat
1401 ctagatttat aagattcatt cttgacatat cctttacaaa tggttgttag
1451 aatagaacag aaataaatcg caaggaaaat gaatgcaata agcaatatca
1501 ctctgatagt atcaaaaaac gagccaaaat aacttgcaat gaaattgaat
1551 gggctcttaa tataatccca gaagccccat gcggaagaat cagaattata
1601 ttgttgttcc tcatgagcat actcatcatt ttgatctatt atgttctctg
1651 gttcttctac aacaacattg ttgaccggaa cctccacaga aatatctgga
1701 ttgccttctg gatacaacgt cattttcttc ttgtccggat tagcagaaca
1751 aaacattgtt atgttgtatt tatttgatcc ttttttaaca gccagttgat
1801 aagtagatag agagcaagca tctatagaaa ttgaagtaga aaatgtcaaa
1851 tccgagaaaa attctaaaat gcaagataaa ccttgaccgc atagaagaca
1901 gccgttgcaa tttaattttg ttgaagttat ggaaggtctc ttaggagcaa
1951 ttttaaaaag atcagatgga agatcaacga caatcttgag tttgcctaaa
2001 ctgaaagctt tttccaagaa aaaactagag aaatccttga aactaacagg
2051 aatatctgat atttgctcta aaccagatct aaatctgtat gtatcatatc
2101 cgcatgtttt aatagtgatt gattttttcc ctattgctgc acaatcccaa
2151 gacatgtcat ctccttctag agttttctta gtaaaaatag gcactccatc
2201 atgagtcaat tgtgggtgac caaacatttt gacaggatca ttcaagtttg
2251 caatatttcc agaataaata tggccgtcag gtccatgagc tatcagttca
2301 cctatagtga taccatcatt gtgcaaatct gcttgtatat cagcttgaaa
2351 caaagcattt tcataaggaa cctcttcagt gatccttgag cactgacctc
2401 ctaaaatacc agaaatacaa acatctgcca ctatggttga ttttagcact
2451 gaataaattc tgtatgattt atccatgtca tagatattcc gacagaatcc
2501 acatgtagca ccttcattaa ttgcaaaaca ccaagcttct tcacatcccc
2551 aataagaagt tggtgttata caaaaatctt ggaaacctgt taaagcttga
2601 ttttttctgc aagtgtcaca gtttcctgtg caagttgaat aaaaatctgt
2651 gtgagtgctt tggataggag ctgttgtgta tttttctgac acttcataat
2701 gaattcccac acttttgata taaatcacaa attttttggc tgtttccgag
2751 gttttatcat tcaacatgaa tatagcccct cctcctccta aaagagattg
2801 ttctatcatg tatctatatt tcccatctac aacagaatca aagatcaatg
2851 attgtctagg cagaatgttc tctggtatgc ttgtttcatt tttgtttaga
2901 gagtctcctg caatcattcc agaaattttg tctgtactat tataagaatc
2951 tattatacca ttcctcaatc tcttagcttc atacagacca accgatgtca
3001 accctaaaga gcttcctgta taatccgaaa atccgttata caaaggtttg
3051 tttctaaata aatctaggta ttcgcaaccc aatctgcatt ttataagatt
3101 atcaatagat gggtgtgcaa cgcaattctg gttctctatg caatcattag
3151 gaccttctat aacaatgtta gtgccaaaga tactttctat aatcgtatct
3201 tcttttacat tacagtaaca ttgatctttt tcagggcatt tctcaaattt
3251 gcttgtaacc aaaaacggac agcctggaac ataaaaacat ccacttaaac
3301 attgggtagt ttgagccata gacatgggca tttgagacaa aatgaccaaa
3351 cctattaaga tttcagtcac aaatttcagc aaactgaagc taagcttagt
3401 gttcactatt agatggaacc attccatgct agtccactta tgtttgttgt
3451 agtcatgatc tgtttcttta gacaatatgg gacactctga agaatgttct
3501 tttgaagctt tgcttttgtt gcagatgcaa attttagcac attcatgtgt
3551 gattatgcac aaattgccac agttagaaca tttaaatgga aaatatttcc
3601 ataagcaatt tatgagcaac aaaatagggt atgtgatcaa gcctataaga
3651 tcataccaga gaaaaagggg tttggttgtc ttgtttacta accaccggat
3701 agggaaatag atcaacaaag ctatcaatat taatcttatc caagaaaaat
3751 tgatgcaggc tgtttgttta taaatgcttt ttgaatattt gattatgcaa
3801 tctctaactc ttttgtttgt ttttggtatt ttagctgatt tgtcaccgca
3851 caagagattg tgctcaccat ccaacatttc ctcagtaaaa gtgatgcttg
3901 ctgatccaga aaaagatatg accttgtgtt ccacattttc accaggcttt
3951 tttatcaaat aacccatgat cttctcaggg ctagtgatgc taacagtata
4001 gggattagca aagtttgatt tagttatttt gcagtcgcca gataacttca
4051 cagtttgtaa tgatactgtt ccattagtag ggtacgagtt ataagttata
4101 ggataattat cttgtgtcag gctttctgaa atgaagaatt ttgtcccaac
4151 tgaaaaatgc cttttgttgt caagtttggt aataggaata accgggactt
4201 tagagaatct ttttggcaga tttaaagaat tgtcacattt ttctaaacct
4251 tctgctgaat cagaaacaca ggaatatatg acaccattat tttccacttg
4301 ataataaaca ttataagtgg atatcccttt tatctcacat tttaatgaag
4351 aagcattcaa gcagttgttg ggaagatccg agacagagat tgttttttgc
4401 gtagttgatt cagcaaaaat agggatggtt gattcttctt ctcgtatctg
4451 gcgggttcca ggagtctgag attctagcat cagattagtt aaagtctcca
4501 agatagcctt gcgttgaatt gatgcagcag tgagtacttc attctcagca
4551 gaatcatcat aaacctcaag atggtctcca cgaattattt ctactttggc
4601 atctgtggct ctgaagatca agaatgccaa caagacagaa ctcagggcaa
4651 ttgtgaaaag actcactttt accactagtt ctagtagttt taaaaatctc
4701 atcctagacg tctgctcaga ttataatggt tatatgatta atttcaagat
4751 gtctggatta aggtttttgt ttgcactgat tgctct