Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-6 segment S, complete sequence.
ACC No: KC261955
Dated: 2013-06-04 | Length: 2969 | CRC: 1571990701
ID KC261955; SV 1; linear; genomic RNA; STD; VRL; 2969 BP.
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AC KC261955;
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DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate TSWV-6 segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2969
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
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RN [2]
RP 1-2969
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
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CC GenBank Accession Numbers KC261953-KC261955 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-6.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2969
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /host="Stellaria media"
FT /isolate="TSWV-6"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Dec-2009"
FT /db_xref="taxon:11613"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /gene="NSs"
FT /product="nonstructural protein"
FT /protein_id="AGM53744.1"
FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT
FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI
FT SEAYDSGSK"
FT gene complement(2042. .2818)
FT /gene="N"
FT CDS complement(2042. .2818)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="AGM53745.1"
FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKHKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ Sequence 2969 BP; 949 A; 550 C; 472 G; 998 T; 0 other;
kc261955 Length: 2969 04-JUN-2013 Type: N Check: 6107 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cgcaacactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttacgagt cgatcattca gacaaaagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctccact agttcaaacc cagttgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat taatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacta acggagtgaa acatcaaggt catttgaaag ttttgtctcc
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa
601 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc
651 ctaacagaaa tgtccatgaa tggctgtact gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcag gcttttgtaa
801 aagcttccac tgattctcat ttcaaactga gcctctggct aagagttcca
851 aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga
901 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata
951 acagtgttga gacagcttta aacatttctg ttatttgcaa gcaccagatc
1001 ccaattcgta aatgtcaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccagagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct
1201 aactcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag
1251 atatctgcaa aaggaaatat ttcctttcaa aaacgcttga atgtctacca
1301 tctaacacac aaactatgtc ttacttagac agcatccaga tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctcca caatctgttt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg
1501 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata
1551 attatttctc tattttgtaa tttcttttga atttctcctg tttaatagaa
1601 accataaaat aaaaataaaa ataaaaataa aaatcaaaat gaaacaaaaa
1651 tcaaaaaatg aacaaaaatc aaacaaaaat caaaaaatga aataaagaca
1701 acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa agggacaatt
1751 ttggccaaac ttgggttttg tttttgtttt ttgtttgttt tttgttttta
1801 ttttattttc atttttattt atttatttta ttttattttt atttttattt
1851 tatttttatt ttcattttat gttttttgtt gtttttgtta ttttgtttat
1901 tattaagcac aacacacaga aagcaaactt taattaaaca cacttgtttt
1951 aaatttaaca cactaagcaa gcacaagcaa taaagataaa gaaagcttta
2001 tatatttata ggctttttta taatttaact tacagctgct tttaagcaag
2051 ttctgcaagt tttgcctgtt ttttaacccc gaacatttca tagaacttgt
2101 taagagtttc actgtaatgt tccatagcaa tacttccttt agcattagga
2151 ttgctggagc taagtatagc agcatactct ttccctttct tcacctgatc
2201 ttcattcatt tcaaatgctt tgctttttag cacagtgcaa acttttccta
2251 gggcttccct ggtgtcatac ttttttggat cgatcccgag gtctttgtgt
2301 tttgcatcct gatatatagc caagacaaca ctgatcatct caaagctatc
2351 aactgaagca ataagaggta agctacctcc cagcattatg gcaagcctca
2401 cagactttgc atcatcaaga ggtaatccat aggcttggat caaagggtga
2451 gaagcaatct tagatttgat agtattgaga ttctcagaat tcccggtttc
2501 ctcgacaagc ctgaccctga tcaagctatc aagccttctg aaggtcatgt
2551 cagtggctcc aatcctgtct gaagttttct ttatggtaat tttaccaaaa
2601 gtaaaatcac tttgcttaat aaccttcatt atactctgac gattcttcag
2651 gaatgtcaga catgaaataa tgctcatctt cttgatctgg tcaaggtttt
2701 ccagacaaaa agtcttgaag ttgaatgcta ccagattctg gtcttcctca
2751 aattcaagat ctttgctttg tgtcaacaaa gcaacaatgt tttccttagt
2801 gagcttaacc ttagacatga tgatcgtaga agttgttata tgctttgacc
2851 gtatgtaatt caaggtgcga aagtacaact ctgtattccg cagtcgtttc
2901 ttagggtttt aatgtgatga tttgtaagac tgagtgttaa ggtttgaata
2951 aaattgacac aattgctct