Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-10 segment S, complete sequence.
ACC No: KC261964
Dated: 2013-06-04 | Length: 2975 | CRC: 1683156100
ID KC261964; SV 1; linear; genomic RNA; STD; VRL; 2975 BP.
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AC KC261964;
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DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate TSWV-10 segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2975
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
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RN [2]
RP 1-2975
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
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CC GenBank Accession Numbers KC261962-KC261964 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-10.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2975
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /host="Stellaria aquatica"
FT /isolate="TSWV-10"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Sep-2009"
FT /db_xref="taxon:11613"
FT gene 89. .1492
FT /gene="NSs"
FT misc_feature 89. .1492
FT /gene="NSs"
FT /note="nonfunctional nonstructural protein due to mutation"
FT gene complement(2048. .2824)
FT /gene="N"
FT CDS complement(2048. .2824)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="AGM53730.1"
FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ Sequence 2975 BP; 950 A; 546 C; 471 G; 1008 T; 0 other;
kc261964 Length: 2975 04-JUN-2013 Type: N Check: 4587 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cgcaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttacgagt cgatcattca gacaaaagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctccact agttcaaacc cagttgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat taatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacta acggagtgaa acatcaaggt catttgaaag ttttgtctcc
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa
601 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc
651 ctaacagaaa tgtccatgaa tggctgtact gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcag gcttttgtaa
801 aagcttccac tgattctcat ttcaaactga gcctctggct aagagttcca
851 aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga
901 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata
951 atagtgttga gacagcttta aacatttctg ttatttgcaa gcaccagatc
1001 ccaattcgta aatgtcaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccagagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct
1201 aactcctgga aagttagatc taggtggaag aaccttaaat tacagtgaag
1251 atatctgcaa aaggaaatat ttcctttcaa aaacacttga atgtctacca
1301 tctaacacac aaactatgtc ttacttggac agcatccaga tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctcca caatctgttt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga tctcggaagc atatgattca tgatcgaaat aatcttgctg
1501 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata
1551 attatttctc tattttgtaa tttcttttga atttctcctg tttaatagaa
1601 accataaaaa taaaaataaa aataaaaata aaaatcaaaa tgaaacaaaa
1651 atcaaaaaat gaacaaaaat caaacaaaaa tcaaaaaatg aaataaagac
1701 aacaaaaaaa taaaaaacaa aaaaccaaaa aagatcccga aagggacaat
1751 tttggccaaa tttgggtttt gtttttgttt tttgtttttt gttttttgtt
1801 tttattttat ttttattttt atttatttat tttattttat ttttattttt
1851 atttttattt ttattttcat tttatgtttt ttgttgtttt tgttattttg
1901 tttattatta agcacaacac acagaaagca aactttaatt aaacacactt
1951 attttaaatt taacacacta agcaagcaca agcaataaag ataaagaaag
2001 ctttatatat ttataggctt tttttataat ttaacttgca gctgctttta
2051 agcaagttct gcaagttttg cctgtttttt aaccccgaac atttcataga
2101 acttgttaag agtttcactg taatgttcca tagcaatact tcctttagca
2151 ttaggattgc tggagctaag tatagcagca tactctttcc ctttcttcac
2201 ctgatcttca ttcatttcaa atgctttgct ttttagcaca gtgcaaactt
2251 ttcctagggc ttccctggtg tcatactttt ttggatcgat cccgaggtct
2301 ttgtattttg catcctgata tatagccaag acaacactga tcatctcaaa
2351 gctatcaact gaagcaataa gaggtaagct acctcccagc attatggcaa
2401 gcctcacaga ctttgcatca tcaagaggta atccataggc ttggatcaaa
2451 gggtgagaag caatcttaga tttgatagta ttgagattct cagaattccc
2501 ggtttcctcg acaagcctga ccctgatcaa gctatcaagc cttctgaagg
2551 tcatgtcagt ggctccaatc ctgtctgaag ttttctttat ggtaatttta
2601 ccaaaagtaa aatcactttg cttaataacc ttcattatac tctgacgatt
2651 cttcaggaat gtcagacatg aaataatgct catcttcttg atctggtcaa
2701 ggttttccag acaaaaagtc ttgaagttga atgctaccag attctgatct
2751 tcctcaaatt caagatcttt gctttgtgtc aacaaagcaa caatgttttc
2801 cttagtgagc ttaaccttag acatgatgat cgtagaagtt gttatatgct
2851 ttgaccgtat gtaattcaag gtgcgaaagt acaactctgt attccgcagt
2901 cgtttcttag ggttttaatg tgatgatttg taagactgag tgttaaggtt
2951 tgaataaaat tgacacaatt gctct