Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-12 segment M, complete sequence.
ACC No: KC261966
Dated: 2013-06-04 | Length: 4829 | CRC: -234963251
ID KC261966; SV 1; linear; genomic RNA; STD; VRL; 4829 BP.
XX
AC KC261966;
XX
DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Tomato spotted wilt virus isolate TSWV-12 segment M, complete sequence.
XX
KW .
XX
OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN [1]
RC Publication Status: Online-Only
RP 1-4829
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
XX
RN [2]
RP 1-4829
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
XX
CC GenBank Accession Numbers KC261965-KC261967 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-12.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .4829
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="lettuce"
FT /isolate="TSWV-12"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="May-2010"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="NSm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="NSm"
FT /product="nonstructural protein"
FT /protein_id="AGM53727.1"
FT /translation="MLTLFGNKRPSRSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT gene complement(1338. .4745)
FT /gene="Gn-Gc"
FT CDS complement(1338. .4745)
FT /codon_start=1
FT /gene="Gn-Gc"
FT /product="glycoprotein precursor"
FT /protein_id="AGM53728.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP
FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTPGTRQIREEKSTIPISTEPATQKT
FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKIAKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA
FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILVGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQDCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIALGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL
FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSADP
FT DKRKMTLYPEGNPDMSVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD
FT DEPEIKAPMLMKDTMTRRRPPMDFSHLV"
XX
SQ Sequence 4829 BP; 1548 A; 869 C; 846 G; 1566 T; 0 other;
kc261966 Length: 4829 04-JUN-2013 Type: N Check: 7245 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaacta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa caagaggcct tctaggtctg ccggaaagga
151 tgaaggtcct ttagtttcac ttgctaaaca taatggcaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttaac caaagccatg
251 gatgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgctagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg aaagcaaaat gctaataagg ttatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacagggaa acttgtggtt
551 gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg
601 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt
651 ctattccaaa gatgaacaac accccagaaa actgttgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaaaggggtt tcttttggta gcgtcatgta
751 ttcctggaca aaagagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtatggt tatacctcta aacagggcca ttagagctag gtctcaagca
851 ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca
901 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgacagtg ttgctcagtt atcctttgat
1001 gaaatatagt ttttaaaaac acttatttaa gcttaaattt ctgtctattt
1051 tgcatttcga atccaaaaac ccgaaacaaa aaacaaaaaa caaaaaaaga
1101 aaaaacaaac aaaaaaatca aaccaaaaaa caaaaacaaa ataaggctga
1151 aaagccaaac tttggtccga agactctttt tgttgttttt tgtttatttg
1201 tatttttttt gtttgttgtt ttttgtttat ttcatatttg ctttttatta
1251 gtcaatgatt gattctaaag atttttatat atataaaatc ctgctaatat
1301 agaagattga atcaaattta atctgtgaca agcatcctca gacaaggtga
1351 gagaaatcca taggtggcct tcgtcttgtc attgtatctt tcattaacat
1401 aggggctttg atctcaggtt catcatcatc ctctatcttg gatctagatt
1451 tataagattt atgctttaca tatcctttac aaatggatgt cagaatagaa
1501 cagaaataaa tcacaaggaa aatgaatgca ataagcaata tcactctgat
1551 agtatcaaaa aatgagccaa agtaacttgc aatgaaattg aatggacttt
1601 taatataatc ccagaagccc catgcagaag aatcagaatt atattgttgt
1651 tcttcatgag catactcatc attttgatct attatattct ctggttcttc
1701 tataataaca ttattaacca aaacttccac agacatatct ggattgcctt
1751 ctggatacag tgtcattttc cttttgtccg ggtcggctga acaaaacatt
1801 gttatattgt atttattaga tcctttttta acagccagct gataagtaga
1851 taaagagcaa gcgtctatag aaattgcagt agaaaatgtc aaatctgaga
1901 aaaattctaa aatgcaagat aaaccttggc cgcatagaag acagccgttg
1951 caatttaagc ttgttgaagt tatggaaggt tttttaggaa caactttaaa
2001 aagatcagat ggaagatcaa ctacaatttt cagtttccct aaactaaaag
2051 atttttccag gaaaaaacta gagaaatctt tgaaactaac aggaatatct
2101 gatatttgct ctaaaccaga tctaaacctg tatgtgtcat atccacatgt
2151 tttaatagtg actgattttt ttcctattgc tgcacaatcc caagacatgt
2201 catctccttc tagagttttc ttagtaaaaa taggcactcc atcatgggtc
2251 aattgcggat gaccaaacat tttcacagga tcattcaagt ttgcaatatt
2301 tccagagtaa atatggctgt caggtccaag agctattagt tcacctatag
2351 tgataccatc attatgcaaa tctgcctgta tatcagcttg aaacaatgta
2401 ttttcataag gaacttcttc agtaatcctt gagcattgac ctcccaaaat
2451 accagaaata caaacatctg ctactatagt tgatttgagc actgaataaa
2501 ttctatatga tttgtccata tcataaatat ttcgacagaa tccgcatgta
2551 gcaccctcat taattgcaaa acaccaagct tcttcacatc cccaataaga
2601 agttggtgtt atacaaaaat cttggaaacc tgttaaagct tgatttttcc
2651 tgcaagtatc gcagtttcct gtacaagtgg aataaaaatc cgtatgggtg
2701 ctttggatgg gagctgttgt atatttttct gacacttcat aatgaattcc
2751 cacacttttg atataaatca caaatttttt ggctgtttct gaggtcttgt
2801 catttagcat aaatatagtt cctcctcctc ccaaaagaga ttgttctatc
2851 atatatctat atttcccgtc tacaacagaa tcaaagatta atgattgcct
2901 gggcaggatg ttctctggta tgcttgtttc atttttgtct aaagagtctc
2951 ctgcaatcat tccagaaatt ttgtctgtac gattatagga atctattata
3001 ccatttctca atctcttagc ctcatacaga ccaactgatg ttaaccctaa
3051 agagcttcct gtataatcag aaaacccatt gtacaaaggt ttgttctgaa
3101 ataaatctag gtattcgcaa cctaatctgc attttataag attatcaata
3151 gatgggcgtg caatgcaatc ctggttctct atgcaatcat tagggccttc
3201 tataacaata ttagtgccaa agatactttc tatgatcttg tcttctttta
3251 cattgcagta acattgatct ttttcagggc atttttcaaa tttgcttgta
3301 accaaaaatg gacagcctgg aacataaaag catccactca aacattgggt
3351 tgtttgagcc atagacatgg gcatctgaga caaaatgact aaacctacca
3401 aaatttcggt cacaaatttt agcaaactca agctcagctt agtgttcact
3451 attagatgga accattccat gctagtccac ttatgtttgt tgtagtcatg
3501 atctgtctct ttggataata tgggacactc tgaagaatgc tcttttgaag
3551 ctttgctttt gttgcaaatg cagactttag tacactcatg tgtgactatg
3601 cacaaattgc cgcagttaga acatttaaat gggaaatatt tccataagca
3651 atttatgagc aataagacag ggtatgtgat caagcccata agatcatacc
3701 agagaaagag aggtttagtc gtcttgttca ctaaccatcg gatagggaaa
3751 tagatcaaca aagctatcaa tatcaatctt atccaagaaa aattgatgca
3801 ggctgtttgc ttataaatac tttttgaata tttgattatg caatctctga
3851 ctcttttgtt tgtttttggt attttagctg atttgtcacc gcacaagaga
3901 ttgtgttcac catccaacat ttcctcggta aaagtgatac ttgctgatcc
3951 agaaaaagct ataaccttgt gttccacatt ttcaccaggt ttttttatca
4001 gataacccat gatcttctca gggctagtga tgctcacagt atagggattt
4051 gcaaagtttg atttagctat tttgcagtca ccagataact ttacagtttg
4101 taatgatact gttccattag tggggtatga gttgtaagtt ataggataat
4151 tatcttgtgt caggctttct gaaatgaaga attttgttcc tactgaaaaa
4201 tgtcttttgt tgtcaagttt ggtaatagga ataactggga ctttggagaa
4251 tctctttggc aaatttaaag aattatcaca tttttctaaa ccttctgctg
4301 aatcagaaac acaggaatat atgacaccat tgttttcaac ttgataataa
4351 acattataag tagatatccc ttttatctca cattttaatg aggaagcatt
4401 caagcagttg ttgggaaggt ccaaaacaga gattgttttt tgcgttgctg
4451 gctcagtgga aatagggatg gttgattttt cttctcgtat ctgacgggtt
4501 ccaggagtcc gagattctag catcagatta gttaaagtct ccaagatagc
4551 ttcgcgttga atcgatgcag cagtgggtac ctcattctca gcagaatcat
4601 cataaatctc aggatgatct ccacgaatta tttctacttt agcatctgtg
4651 gctctgaaga tcaagaatgc caacaaaaca gaactcaggg caattgtgaa
4701 aagactcact tttaccacta gttctagtag ttttagaatt ctcatcttag
4751 atgtctaccc agattacaat ggttgtgtga ttaatttcaa gatgtctgga
4801 ttaaggtttt tgtttgcact gattgctct