Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-16 segment M, complete sequence.
ACC No: KC261969
Dated: 2013-06-04 | Length: 4788 | CRC: 745226204
ID KC261969; SV 1; linear; genomic RNA; STD; VRL; 4788 BP.
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AC KC261969;
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DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate TSWV-16 segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-4788
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
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RN [2]
RP 1-4788
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
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CC GenBank Accession Numbers KC261968-KC261970 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-16.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .4788
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="tomato"
FT /isolate="TSWV-16"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Jun-2010"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="NSm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="NSm"
FT /product="nonstructural protein"
FT /protein_id="AGM53722.1"
FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVLYSWTKE
FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT gene complement(1297. .4704)
FT /gene="Gn-Gc"
FT CDS complement(1297. .4704)
FT /codon_start=1
FT /gene="Gn-Gc"
FT /product="glycoprotein precursor"
FT /protein_id="AGM53723.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT
FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA
FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIMESIFGTNIVIEG
FT PNDCIENQDCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNSTDKISGTIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTRL
FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDAIRVILLIASIFLAIYFCSVLTTICKGYVKNESYKSRSKIEDD
FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4788 BP; 1546 A; 850 C; 847 G; 1545 T; 0 other;
kc261969 Length: 4788 04-JUN-2013 Type: N Check: 6370 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactt ttttcagtaa taaggggtct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac tagctaaaca taatggtaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 cggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgcaagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg gaagcagaac gctaataagg tcatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tctaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacaggaaa acttgtggtt
551 gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg
601 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt
651 ctattccaaa aataaacaac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaaaggggtt tcttttggta gtgtcttgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtgtggt tatacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca
901 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagt acttttaata ccacttattt aagcttaaat ttctgttaat
1051 tttgcatttt taaatcaaaa aacaaaacaa aaacaaaaaa caaaaaagaa
1101 aaacaaaaaa caaaaaaatc aaaaaaagaa aaaacaaaaa caaaataagg
1151 ctgaaaagcc aaactttggt ccgaagactc tttttttgtt gttttttgtt
1201 tatttgtatt ttttgtttgt ttttttgttt attttatata tacataatct
1251 gactaatgta gagaattgaa tcaaatttag cctgtgacaa gcagcctcag
1301 acaaggtgag agaaatccat aggtggcctt cgtcttgtca ttgtatcttt
1351 cattaacata ggggctttga tctcagaatc atcgtcatcc tctatcttgg
1401 atctagattt ataagattca ttcttgacat atcctttaca aatggttgtt
1451 agaacagaac agaaataaat cgcaaggaaa atggatgcaa tgagcaatat
1501 cactctgata gcatcaaaaa acgagccaaa ataacttgca atgaaattga
1551 atgggctctt aatataatcc cagaagcccc atgctgaaga atcagaatta
1601 tattgttgtt cctcatgagc atactcatca ttttgatcta ttatgttctc
1651 tggttcttct acaacaacat tgttgaccag aacctccaca gaaatatctg
1701 gattgccttc tggatacaac gtcatttttt tcttgtccgg attagcagaa
1751 caaaacattg ttatgttgta tttatttgat ccttttttaa cagccagttg
1801 ataagtagat agagagcaag catctataga aattgaagta gaaaatgtca
1851 aatccgagaa aaattctaaa atgcaagata aaccttgacc gcatagaaga
1901 cagccgttgc aatttaatct tgttgaagtt atggaaggtc tcttaggagc
1951 aattttaaaa agatcagatg gaagatcaac gacgatcttg agtttgccta
2001 aactgaaagc tttttccaag aaaaaactag agaaatcctt gaaactaaca
2051 ggaatatctg atatttgctc taaaccagat ctaaatctgt atgtatcata
2101 tccgcatgtt ttaatagtga ttgatttttt ccctattgct gcacaatccc
2151 aagacatgtc atctccttct agagttttct tagtaaaaat aggcactcca
2201 tcatgagtca attgtgggtg accaaacatt ttgacaggat cattcaagtt
2251 tgcaatattt ccagaataaa tatggccgtc aggtccatga gctatcagtt
2301 cacctatagt gataccatca ttgtgcaaat ctgcttgtat atcagcttga
2351 aacaaggcat tttcataagg aacctcttca gtgatccttg agcactgacc
2401 tcctaaaata ccagaaatac aaacatctgc cactatggtt gattttagca
2451 ctgaataaat tctgtatgat ttatccatgt catagatatt ccgacagaat
2501 ccacatgtag caccttcatt aattgcaaaa caccaagctt cttcacatcc
2551 ccaataagaa gttggtgtta tacaaaaatc ttggaaacct gttaaagctt
2601 gattttttct gcaagtgtca cagtttcctg tgcaagttga ataaaaatct
2651 gtgtgagtgc tttggatagg agctgttgtg tatttttctg acacttcata
2701 atgaattccc acacttttga tataaatcac aaattttttg gctgtttccg
2751 aggttttatc attcaacatg aatatagccc ctcctcctcc taaaagagat
2801 tgttctatca tgtatctata tttcccatct acaacagaat caaagatcaa
2851 tgattgtcta ggcagaatgt tctctggtat gcttgtttca tttttgttta
2901 gagagtctcc tgcaatcgtt ccagaaattt tgtctgtact attataagaa
2951 tctattatac cattcctcaa tctcttagct tcatacagac caaccgacgt
3001 caaccctaaa gagcttcctg tataatctga aaacccgtta tacaaaggtt
3051 tgtttctaaa taaatctagg tattcgcaac ctaatctgca ttttataaga
3101 ttatcaatag atgggtgtgc aacgcaatcc tggttctcta tgcaatcatt
3151 aggaccttct ataacaatgt tagtgccaaa gatactttcc ataatcgtat
3201 cttcttttac attacagtaa cattgatctt tttcagggca tttttcaaat
3251 ttgcttgtaa ccaaaaaagg acagcctgga acataaaaac atccacttaa
3301 acattgggta gtttgagcca tagacatggg catttgagac aaaatgacca
3351 aacctattaa gatttcagtc acaaatttca gcaaactgaa gctaagctta
3401 gtgttcacta ttagatggaa ccattccatg ctagtccact tatgtttgtt
3451 gtagtcatga tctgtttctt tggacaatat gggacactct gaagaatgtt
3501 cttttgaggc tttgcttttg ttgcagatgc aaattttagt acattcatgt
3551 gtgattatgc acaaattgcc acagttagaa catttaaatg gaaaatattt
3601 ccataagcaa tttatgagca acaaaatagg gtatgtgatc aagcctataa
3651 gatcatacca gagaaaaagg ggtttggttg tcttgtttac taaccaccgg
3701 atagggaaat agatcaacaa agctatcaat attaatctta tccaagaaaa
3751 attgatgcag gctgtttgtt tataaatgct ttttgaatat ttgattatgc
3801 aatctctaac tcttttgttt gtttttggta ttttagctga tttgtcaccg
3851 cacaagagat tgtgctcacc atccaacatt tcctcagtaa aagtgatgct
3901 tgctgatcca gaaaaagata tgaccttgtg ttccacattt tcaccaggct
3951 tttttatcaa ataacccatg atcttctcag ggctagtgat gctaacagta
4001 tagggattag caaagtttga tttagttatt ttgcagtcgc cagataactt
4051 cacagtttgt aatgatactg ttccattagt agggtacgag ttataagtta
4101 taggataatt atcttgtgtc aggctttctg aaatgaagaa ttttgtccca
4151 actgaaaaat gccttttgtt gtcaagtttg gtaatgggaa taactgggac
4201 tttagagaat ctttttggca gatttaaaga attgtcacat ttttctaaac
4251 cttctgctga atcagaaaca caggaatata tgacaccatt attttccact
4301 tgataataaa cattataagt ggatatccct tttatctcac attttaatga
4351 agaagcattc aagcagttgt tgggaagatc cgagacagag attgtttttt
4401 gcgtagttga ttcagcaaaa atagggatgg ttgattcttc ttctcgtatc
4451 tggcgggttc caggagtctg agattctagc atcagattag ttaaagtctc
4501 caagatagcc ttgcgttgaa ttgatgcagc agtgggtact tcattctcag
4551 cagaatcatc ataaacctca ggatggtctc cacgaattat ttctactttg
4601 gcatctgtgg ctctgaagat caagaatgcc aacaagacag aactcagggc
4651 aattgtgaaa agactcactt ttaccactag ttctagtagt tttaaaattc
4701 tcatcctaga cgtctgctca gattataatg gttatatgat taatttcaag
4751 atgtctggat taaggttttt gtttgcactg attgctct