Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate TSWV-16 segment S, complete sequence.
ACC No: KC261970
Dated: 2013-06-04 | Length: 2973 | CRC: 788981272
ID KC261970; SV 1; linear; genomic RNA; STD; VRL; 2973 BP.
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AC KC261970;
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DT 04-JUN-2013 (Rel. 117, Created)
DT 04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate TSWV-16 segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2973
RX PUBMED; 23696821.
RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.;
RT "Phylogenetic and recombination analysis of tomato spotted wilt virus";
RL PLoS One 8(5):E63380-E63380(2013).
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RN [2]
RP 1-2973
RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.;
RT ;
RL Submitted (27-NOV-2012) to the INSDC.
RL Department of Agricultural Biotechnology, Seoul National University,
RL Gwanakno 599, Seoul 151-921, South Korea
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CC GenBank Accession Numbers KC261968-KC261970 represent sequences
CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-16.
CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2973
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /host="tomato"
FT /isolate="TSWV-16"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /collection_date="Oct-2010"
FT /db_xref="taxon:11613"
FT gene 89. .1492
FT /gene="NSs"
FT CDS 89. .1492
FT /codon_start=1
FT /gene="NSs"
FT /product="nonstructural protein"
FT /protein_id="AGM53720.1"
FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT
FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI
FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTTGKLDLGERTLNYSEDICKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI
FT SEAYDSGSK"
FT gene complement(2046. .2822)
FT /gene="N"
FT CDS complement(2046. .2822)
FT /codon_start=1
FT /gene="N"
FT /product="nucleocapsid protein"
FT /protein_id="AGM53721.1"
FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ Sequence 2973 BP; 953 A; 547 C; 469 G; 1004 T; 0 other;
kc261970 Length: 2973 04-JUN-2013 Type: N Check: 3360 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cgcaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttacgagt cgatcattca gacaaaagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggtactg
201 gttctccact agttcaaacc cagttgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcatcaatat taatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacta acggagtgaa acatcaaggt catttgaaag ttttgtctcc
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gctccaagaa aaagacataa ttcccaatga cagatacatt
551 gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa
601 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc
651 ctaacagaaa tgtccatgaa tggctgtact gtttcaagcc aaatttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcag gcttttgtaa
801 aagcttccac tgattctcat ttcaaactga gcctctggct aagagttcca
851 aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga
901 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata
951 atagtgttga gacagcttta aacatttctg ttatttgcaa gcaccagatc
1001 ccaattcgta aatgtcaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat ccccagagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct
1201 aactacagga aagttagatc taggtgaaag aaccttaaat tacagtgaag
1251 atatctgcaa aaggaaatat ttcctttcaa aaacacttga atgtctacca
1301 tctaacacac aaactatgtc ttacttagac agcatccaga tcccttcctg
1351 gaagatagac tttgccaggg gagaaattaa aatttctcca caatctgttt
1401 cagttgcaaa atctttgtta aagcttgatt taagcgggat caaaaagaaa
1451 gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg
1501 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata
1551 attatttctc tattttgtaa tttcttttga atttctcctg tttaatagaa
1601 accataaaaa taaaataaaa ataaaaataa caatcaaaat gaaacaaaaa
1651 tcaaaaaatg aacaaaaatc aaacaaaaat caaaaaatga aataaaaaca
1701 acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa agggacaatt
1751 ttggccaaat ttgggttttg tttttgtttt ttgttttttg ttttttgttt
1801 ttattttatt tttattttta tttatttatt ttattttatt tttatttata
1851 tttttatttt tattttcatt ttatgttttt tgttgttttt gttattttgt
1901 ttattattaa gcacaacaca cagaaagcaa actttaatta aacacactta
1951 ttttaaattt aacacactaa gcaagcacga gcaataaaga taaagaaagc
2001 tttatatatt tataggcttt tttataattt aacttacagc tgcttttaag
2051 caagttctgc aagttttgcc tgttttttaa ccccgaacat ttcatagaac
2101 ttgttaagag tttcactgta atgttccata gcaatacttc ctttagcatt
2151 aggattgctg gagctaagta tagcagcata ctctttccct ttcttcacct
2201 gatcttcatt catttcaaat gctttgcttt ttagcacagt gcaaactttt
2251 cctagggctt ccctggtgtc atactttttt ggatcgatcc ctaggtcttt
2301 gtattttgca tcctgatata tagccaagac aacactgatc atctcaaagc
2351 tatcaaccga agcaataaga ggtaagctac ctcccagcat tatggcaagc
2401 ctcacagact ttgcatcatc aagaggtaat ccataggctt ggatcaaagg
2451 gtgagaagca atcttagatt tgatagtatt gagattctca gaattcccgg
2501 tttcctcgac aagcctgacc ctgatcaagc tatcaagcct tctgaaggtc
2551 atgtcagtgg ctccaatcct gtctgaagtt ttctttatgg taattttacc
2601 aaaagtaaaa tcactttgct taataacctt cattatactc tgacgattct
2651 tcaggaatgt cagacatgaa ataatgctca tcttcttgat ctggtcaagg
2701 ttttccagac aaaaagtctt gaagttgaat gctaccagat tctgatcttc
2751 ctcaaattca agatctttgc tttgtgtcaa caaagcaaca atgttttcct
2801 tagtgagctt aaccttagac atgatgatcg tggaagttgt tatatgcttt
2851 gaccgtatgt aattcaaggt gcgaaagtgc aactctgtat tccgcagtcg
2901 tttcttaggg ttttaatgtg atgatttgta agactgagtg ttaaggtttg
2951 aataaaattg acacaattgc tct