Sequence of DPV Southern rice black-streaked dwarf virus
Southern rice black-streaked dwarf virus isolate HuNTD P6 gene, complete cds.
ACC No: KC424480
Dated: 2013-03-17 | Length: 2650 | CRC: -1439455985
ID KC424480; SV 1; linear; genomic RNA; STD; VRL; 2650 BP.
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AC KC424480;
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DT 17-MAR-2013 (Rel. 116, Created)
DT 17-MAR-2013 (Rel. 116, Last updated, Version 1)
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DE Southern rice black-streaked dwarf virus isolate HuNTD P6 gene, complete
DE cds.
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KW .
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OS Southern rice black-streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC unclassified Fijivirus.
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RN [1]
RP 1-2650
RA Zhang Y.-D., Zhu J.-Z., Cui Y.;
RT "The Complete sequence and Analysis of the segment S6 of Southern Rice
RT Black-Streaked Dwarf Virus of Hunan Tongdao isolate";
RL Unpublished.
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RN [2]
RP 1-2650
RA Zhang Y.-D., Zhu J.-Z., Cui Y.;
RT ;
RL Submitted (28-DEC-2012) to the INSDC.
RL Molecular Biology & Plant Pathology, College of Biosafety Science and
RL Technology, Nongda Road 1, Chashang, Hunan 410128, China
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 6.0.3.40
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2650
FT /organism="Southern rice black-streaked dwarf virus"
FT /host="rice"
FT /isolate="HuNTD"
FT /mol_type="genomic RNA"
FT /country="China:Hunan, Tongdao City"
FT /collection_date="2011"
FT /db_xref="taxon:519497"
FT CDS 81. .2462
FT /codon_start=1
FT /product="P6"
FT /note="putative supressor of RNA silencing; ORF6"
FT /protein_id="AGG91138.1"
FT /translation="MSTNLTNIAMLKKRLQRRVTTNTSVNNEVENTPSQPLEPVANASS
FT SSESSVITKRYARPSNKISSSSTVAENSDDTKLLHNLISAAPNASVLMKPNTDVLNLSK
FT TQTILPSLVVNATCQLKLKDLNDWKGFVLCHPNSPQSSVSSTLYTGNKLFVVFQKKNVQ
FT NDDSEFKMMMKDKAFTFLDSNVFKPKSKEFMTSLYNASSNVIITDSELEFDDLSNLKIC
FT FSPSDIPSLTSLHKRMIKFSFWPSNILIPHLTEIVNHFETLKLAHFEDIELDSSNAESS
FT LFIVSNNKFSEQSENVLQFIDAQPNSQLLINKINDMNERFGSLANGTHFMIGTVPSKSE
FT LDDDKKKNLFGSNHVILMVNPVNILFDTTQLYFLLFSYLNKFVMQASIVQVFTTDLVNH
FT GDMFSVAFNVIKCFYDSISCTLINHVIEDEVDVQKRVLMTVNDLSDDIKEFIPPNATST
FT EDSETDNKRVENEIKALIKFDSQKQQTSTSKTLEVQEQQRSWADVVERTECDVEKTSSI
FT ALNDVIKNMTYEDFVTNAKLIEFARRYSDETGEAHKLKVEMTRLSEENGQLLNAIKHNE
FT ACIIQNNEEILNLREQSDRLTISLKQLDDAYSELVKEKDEVKTERDAFEAKLQEANKVI
FT VEKTTRLNEAIDELEKAEDRNSSVVEEEPDNTEHRNDGFSLFGECLDKVRLLKNKYPHL
FT YSGVDANFGDLTSLLRMLLIKIDSITSLCDANVTVSENQWSAYGLCSLTSSTHDNATTE
FT MLSVNQVGLMNFQVANFTNIVYDVFFYNMFIKFLWQLSSE"
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SQ Sequence 2650 BP; 857 A; 545 C; 463 G; 785 T; 0 other;
kc424480 Length: 2650 17-MAR-2013 Type: N Check: 6539 ..
1 aagttttttg agtctgagat actgttatcc attgcgaacc tgagaacgag
51 tttaacagaa tctcacaccc agaaacaacg atgtctacca acctcacgaa
101 catagccatg ctgaaaaaac gattgcaaag acgagtcacc actaacacct
151 ctgtcaacaa tgaagtcgag aacactccat cccaaccact cgaacctgtt
201 gcgaacgctt cttcttcttc agaaagctcc gtcattacca aacgttacgc
251 ccgtccatct aacaaaattt cttcttcatc tacagttgcc gagaattcag
301 atgatacgaa actgctccac aacttgattt ccgcagcgcc gaatgcttct
351 gtgcttatga aaccaaacac tgacgtactc aatctgtcca aaactcaaac
401 tatccttcca tctttagtag tgaatgcaac ctgtcaactg aaattgaaag
451 atttgaatga ttggaaaggt tttgtactgt gtcatccaaa ttctccccaa
501 tctagcgttt cttccacttt gtataccgga aataaactgt ttgtcgtatt
551 ccagaaaaag aacgttcaaa atgatgattc tgaatttaag atgatgatga
601 aagataaagc tttcactttc cttgattcaa atgtttttaa accgaaatcg
651 aaagaattca tgacttctct ttacaacgcg tcttcaaatg tgatcatcac
701 cgactctgaa ttagaatttg atgatttgag caacttgaaa atctgttttt
751 ccccttccga cattccaagt ttgacttctc ttcacaaaag aatgatcaaa
801 tttagttttt ggccaagtaa cattttgatc cctcatctca ctgaaattgt
851 caaccatttc gaaactttga aacttgcaca ttttgaagac attgaacttg
901 actcttcaaa cgcagaatct tctctcttta tcgtatcaaa caacaagttt
951 tctgaacaaa gtgagaacgt acttcaattt atcgatgctc aaccaaattc
1001 acaacttctg atcaacaaaa ttaatgacat gaacgaacgt tttggttcac
1051 tggcaaacgg cactcatttc atgattggaa ctgtcccttc gaaatctgaa
1101 cttgacgatg ataagaaaaa gaacttgttt ggatcaaatc acgtcatcct
1151 gatggttaat cccgttaaca ttctttttga cacaactcaa ttgtacttcc
1201 tgctgttttc ttatctgaat aaatttgtaa tgcaagcttc aattgttcaa
1251 gttttcacaa ctgatctggt caaccatggt gatatgtttt cagtagcttt
1301 caatgttatc aaatgctttt acgattccat cagttgcacc ctcattaatc
1351 acgtcattga agatgaagtt gacgttcaaa aacgtgtgtt gatgacagtt
1401 aatgatttgt ctgatgacat taaagagttt attcctccca acgccacatc
1451 tacggaagat tctgaaactg acaacaagcg tgtagaaaac gaaattaagg
1501 cattgatcaa attcgactct caaaagcaac aaacatcaac gtcaaaaaca
1551 ctagaagttc aagaacagca acgttcatgg gccgacgtag ttgaaagaac
1601 agaatgcgat gtcgaaaaga cttcttccat tgctcttaat gatgtgatca
1651 aaaacatgac atacgaagat tttgtcacga atgctaagtt gatcgaattt
1701 gcaagacgat actctgatga aacaggcgaa gctcacaaat tgaaagtcga
1751 aatgacacgc ttatcagaag aaaatggtca acttttgaat gccatcaaac
1801 acaacgaagc ttgcatcatc caaaacaatg aagaaatttt gaatttgaga
1851 gaacaaagtg atcgtttgac tatcagcttg aaacaacttg acgacgctta
1901 ttctgaactg gtgaaagaga aagatgaagt taaaactgaa agagatgcgt
1951 ttgaagcgaa attgcaagaa gcgaataaag tgatcgttga gaaaactact
2001 cggttgaacg aagcgattga tgagttggaa aaagctgaag acagaaacag
2051 ttccgttgtc gaagaagaac ctgacaatac tgaacatcgt aacgacggtt
2101 tctcgctttt tggtgaatgt ctcgataaag tgcgtcttct caaaaacaaa
2151 tatcctcatc tttattctgg cgtagatgct aactttggcg atctgacttc
2201 actattgcgt atgcttttga tcaagattga tagtatcact tcactttgcg
2251 atgcgaacgt tactgtgtct gagaaccaat ggagcgcgta tggattatgt
2301 agtttgactt catcaacgca tgacaatgcc acaactgaaa tgctgtctgt
2351 aaatcaagtc ggtttaatga atttccaagt tgcgaacttc accaacatcg
2401 tttatgacgt ctttttttac aacatgttca ttaagttttt gtggcaactt
2451 agttcagagt aatgaacaaa taatcatgaa tgacatctcg tattaacatt
2501 tgcgcactaa cacctagctg atttgagtta ttacaccatc tttaacggac
2551 agagatctca tgttgaactg gattatcggt attcgtgatg gtaagtcagt
2601 tttctctatt cgtcaccttg cccggcaata gactcaaatc agctgatgtc