Sequence of DPV Jatropha leaf curl virus
Jatropha leaf curl virus isolate Lucknow segment DNA-A, complete sequence.
ACC No: KC513823
Dated: 2013-04-30 | Length: 2844 | CRC: 2033395483
ID KC513823; SV 1; circular; genomic DNA; STD; VRL; 2844 BP.
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AC KC513823;
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DT 30-APR-2013 (Rel. 116, Created)
DT 30-APR-2013 (Rel. 116, Last updated, Version 1)
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DE Jatropha leaf curl virus isolate Lucknow segment DNA-A, complete sequence.
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KW .
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OS Jatropha leaf curl virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
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RN [1]
RP 1-2844
RA Raj S.K., Snehi S.K., Srivastava A.;
RT "Molecular characterization of begomovirus associated with mosaic disease
RT of Jatropha integerrima in India";
RL Unpublished.
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RN [2]
RP 1-2844
RA Raj S.K., Snehi S.K., Srivastava A.;
RT ;
RL Submitted (19-JAN-2013) to the INSDC.
RL Plant Molecular Virology, CSIR-National Botanical Research Institute,
RL Lucknow-226001, Rana Pratap Marg, Lucknow, U. P. 226001, India
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CC ##Assembly-Data-START##
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2844
FT /organism="Jatropha leaf curl virus"
FT /segment="DNA-A"
FT /host="Jatropha integerrima"
FT /isolate="Lucknow"
FT /mol_type="genomic DNA"
FT /country="India"
FT /collected_by="Sunil Kumar Snehi"
FT /collection_date="Nov-2011"
FT /clone="AS-JI-2"
FT /proviral
FT /db_xref="taxon:543876"
FT gene 175. .528
FT /gene="AV2"
FT CDS 175. .528
FT /codon_start=1
FT /gene="AV2"
FT /product="pre-coat protein"
FT /protein_id="AGK29968.1"
FT /translation="MWDPLTNEFPETLHGFRCMLAVKYIQALLSSYAPDTVGYEYLRDL
FT ISVLRCRDYAKASVRYGRIVAAKNNTPETELRESLPSHCQCRHCPRHGIQKEGVDVATG
FT EQKTCDIQEKESA"
FT gene 335. .1072
FT /gene="AV1"
FT CDS 335. .1072
FT /codon_start=1
FT /gene="AV1"
FT /product="coat protein"
FT /protein_id="AGK29969.1"
FT /translation="MPKRLFDMVGSSPLRITRRKLNFGSPSRLIASAVTAPDMGYKRRA
FT WMWRPANRKPAIYRRRRAPDVPRGCEGPCKVQSFEKRHDVTHTGGVLCISDVTRGNGIT
FT HRVGKRFCVKSVYILGKIWMDENIKTKNHTNSVIFWLVRDRRPFGTPMDLGQVFNMYDN
FT EPSTATVKNDLRDRYQVLHKWHASVTGGVYASKEQAIIRSSTESIIMWSIITRKPRNTR
FT IILRMRYYCIWHVLMHQIQCMQH"
FT gene complement(1107. .1511)
FT /gene="AC3"
FT CDS complement(1107. .1511)
FT /codon_start=1
FT /gene="AC3"
FT /product="replication enhancer protein"
FT /protein_id="AGK29966.1"
FT /translation="MDSRTGEPITAARLNNGVFIWTVPNPLYFRLINHMSRPFFLDQDI
FT IHLRIQFNHNLRQALQIHKCFLSFKVWTRSRIQTGIFLRVFKTQVIRYLDRLGVISINL
FT VIRAVDHVLYNVLHHTMQVEQSNEIMFRLY"
FT gene complement(1252. .1656)
FT /gene="AC2"
FT CDS complement(1252. .1656)
FT /codon_start=1
FT /gene="AC2"
FT /product="transcriptional activator protein"
FT /protein_id="AGK29967.1"
FT /translation="MLSCSTATVPLQLLSRNARGELRSGGDKAEEDRLEVRLFIFSVIN
FT CANHGFTHRGTHHCSSFEQWRLYLDGPKSSVLPAHQSHEPALLSGPGHHTPPNTIQPQS
FT QASTTDTQVLPELQSLDSFTDSDWDILTSL"
FT gene complement(1590. .2699)
FT /gene="AC1"
FT CDS complement(1590. .2699)
FT /codon_start=1
FT /gene="AC1"
FT /product="replication-associated protein"
FT /protein_id="AGK29970.1"
FT /translation="MPRVSAFSVSAKNIFLTYPKCPLSKETVLDLLRNISCPSDKLFIR
FT VAQEKHEDGSLHIHALIQFKGKARFRNARHFDLTHPHSSSQFHPNIQGAKSSSDVKSYI
FT EKDGDYIDWGSFQIDGRSARGGQQTVNDAAAEALNSGSAEAALAIIREKMPKDYIFQYH
FT NLKSNLERIFTPPRVDYVSPYPLSSFDRVPEELESWASENVISTAARPFRPISIVLEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPQSSYKEYLDEDKNKALKNWAVKNVLFVFISEPL
FT YSSSASQECFRVRQRQSPSSSFQETPEAN"
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SQ Sequence 2844 BP; 818 A; 613 C; 678 G; 735 T; 0 other;
kc513823 Length: 2844 30-APR-2013 Type: N Check: 2709 ..
1 accggatggc cgcgattttt ttaatgtgga ccccatagca gacaaacaga
51 caaagaaaag aaaagggaac ccactacaaa gagaaaagaa ggcatccaat
101 ggagagcgcg cctggaattc aaactaacgt gccgcgcgct ataaaacttg
151 ctggcgaagg agtagagccg caacatgtgg gatccattaa ccaacgagtt
201 tcccgaaacc ctgcacgggt ttcgctgtat gcttgcagtc aaatatatac
251 aagctctact ctcttcgtac gctcctgata cggtcggata cgagtacctt
301 cgtgatctga tcagcgtatt acgctgccgc gactatgcca aagcgtctgt
351 tcgatatggt cggatcgtcg ccgctaagaa taacacgccg gaaactgaac
401 ttcgggagtc cctcccgtct cattgccagt gccgtcactg ccccagacat
451 gggatacaaa aggagggcgt ggatgtggcg accggcgaac agaaaacctg
501 cgatatacag gagaaggaga gcgcctgatg tgccgcgtgg atgtgaggga
551 ccatgcaaag tacaatcatt cgaaaagaga catgatgtta cgcacacggg
601 gggcgttcta tgcatatctg acgtgacacg cggcaatggt atcacgcata
651 gagtgggtaa aagattctgc gtgaaatccg tctatatact tggcaagatt
701 tggatggacg agaatatcaa gacgaagaac catactaaca gcgtgatttt
751 ctggctggtc agagacaggc gtccatttgg cactccaatg gacctgggcc
801 aagtctttaa tatgtatgat aacgagccca gtacagccac agtcaagaac
851 gatctgaggg atagatatca agttttacat aaatggcacg cgtcggttac
901 tggtggtgtc tatgcatcta aggaacaggc gataatcaga agttctacag
951 agtcaataat tatgtggtct ataatcacca ggaagccgcg aaatacgaga
1001 atcatactga gaatgcgtta ttattgtata tggcatgtac tcatgcatca
1051 aatccagtgt atgcaacatt gaaaatacgc atatatttct acgactcaat
1101 ttcaaattaa taaagacgaa acattatttc attgctctgt tcaacctgca
1151 tcgtatgatg cagtacatta tacaatacat gatctacagc tctaattaca
1201 agattaattg aaattacacc taatcgatct aaatatctaa taacttgagt
1251 cttaaagact cgtaagaata tcccagtctg aatccgtgaa cgagtccaga
1301 ctttgaagct caggaagcac ttgtgtatct gtagtgcttg cctgagattg
1351 tggttgaatt gtattcggag gtgtatgatg tcctggtcca gaaagaaggg
1401 ccggctcatg tgattgatga gccggaagta cagaggattt gggaccgtcc
1451 agataaagac gccattgttc aaacgagctg cagtgatggg ttccccggtg
1501 cgtgaatcca tgattcgcgc agttaatgac agaaaatatg aacagccgca
1551 cttcaagtct atcctcctcc gccttatccc cccctgatct cagttcgcct
1601 ctggcgtttc ttgaaaggag ctggaggggg actgtcgctg tcgaacacga
1651 aagcattctt gggaagcgga ggaggagtag agaggttctg agatgaagac
1701 gaataagaca ttcttaacag cccaattctt taatgctttg ttcttatctt
1751 cgtctaagta ctctttatag ctggattggg gcccaggatt gcacaagaag
1801 attgtcggaa tgcccccttt aatttgaacg ggctttccat actttgtgtt
1851 actttgccag tctctctggg cccccataaa ttccttgaag tgcttgagat
1901 aatgcggatc aacatcatca atgacgttat accatacgtc attactatag
1951 actcttgggc tgagatccaa gtgaccgcat aaataattgt gtgggccgag
2001 agaccgagcc cacattgtct tcccagtacg actatcgccc tctaaaacaa
2051 tacttatggg tctaaaaggc cgcgcagcgg tactgataac attctcagag
2101 gcccaactct cgagttcttc cggaactcga tcaaacgaag aaagaggata
2151 aggagaaaca taatctactc taggaggtgt aaatatcctt tctaaattgg
2201 actttaaatt atgatactga aaaatataat cttttggcat cttttcacgg
2251 ataatagcta gagcagcttc tgcagagccg gagtttaggg cctccgctgc
2301 agcatcatta actgtctgtt gacctcctct agcagatctt ccatcgatct
2351 gaaaagaacc ccagtcgatg taatctccgt ccttctcgat ataggactta
2401 acatcagagg aggacttagc tccctggata tttggatgga attgggagga
2451 gctatgagga tgggtgagat cgaaatgtcg tgcatttctg aatctggctt
2501 tacccttgaa ctggataagg gcatggatat gcagtgaccc atcctcgtgt
2551 ttctcctgcg cgactctaat aaataattta tcggaaggac aagatatgtt
2601 tcgcaggagg tccaggactg tctctttgga taatgggcat ttgggataag
2651 tgaggaatat gtttttagcg ctaactgaaa atgcgctaac acgaggcatt
2701 ttaaacagaa tgtattgggg agacgctgta aaactctcta caattgggga
2751 cttggggacg catttatacc agtgtcccca aatggcacgc tcgtaatttt
2801 ttggtgaaaa tcccacggtc aaaagcggcc atccgattaa tatt