Sequence of DPV Barley yellow dwarf virus Ker-III
Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase P1-P2 fusion (ORF1) and RNA-dependent RNA polymerase P1 (ORF1) genes, partial cds; and aphid transmission protein P5 (ORF3), coat protein P3 (ORF3), and movement protein P4 (ORF4) genes, complete cds.
ACC No: KC559092
Dated: 2013-06-13 | Length: 4625 | CRC: -455473152
ID KC559092; SV 1; linear; genomic RNA; STD; VRL; 4625 BP.
XX
AC KC559092;
XX
DT 13-JUN-2013 (Rel. 117, Created)
DT 13-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Barley yellow dwarf virus Ker-III isolate K460 RNA-dependent RNA polymerase
DE P1-P2 fusion (ORF1) and RNA-dependent RNA polymerase P1 (ORF1) genes,
DE partial cds; and aphid transmission protein P5 (ORF3), coat protein P3
DE (ORF3), and movement protein P4 (ORF4) genes, complete cds.
XX
KW .
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OS Barley yellow dwarf virus Ker-III
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; unclassified Luteovirus.
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RN [1]
RP 1-4625
RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.;
RT "Distribution of Barley yellow dwarf virus-PAV in the sub-Antarctic
RT Kerguelen Islands and characterization of two new Luteovirus species";
RL Unpublished.
XX
RN [2]
RP 1-4625
RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.;
RT ;
RL Submitted (31-JAN-2013) to the INSDC.
RL UMR 1332 Biologie du Fruit et Pathologie, INRA, 71 Avenue Edouard
RL Bourleaux, Villenave d'Ornon Cedex, CS 20032 33883, France
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CC ##Assembly-Data-START##
CC Assembly Method :: Mega v. 5.02
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .4625
FT /organism="Barley yellow dwarf virus Ker-III"
FT /host="Poa cookii"
FT /isolate="K460"
FT /mol_type="genomic RNA"
FT /country="France:Kerguelen Islands Chionis"
FT /collection_date="2009"
FT /db_xref="taxon:1304864"
FT gene <1. .2568
FT /gene="ORF1"
FT CDS join(<1. .974,974. .2568)
FT /codon_start=2
FT /ribosomal_slippage
FT /gene="ORF1"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion"
FT /note="RdRp"
FT /protein_id="AGN54055.1"
FT /translation="VKDFISHCYSRLRSIYYSLKRWLWEIQGKFKAHDAFVNMCYGHMS
FT DIEDFEIPLAGEFEVREGEMEIARAKLALMIAQRSEIGVTEAYGKYASLAGCVHVPVDY
FT KPSIKELEAAAESLEGHISEHLKAAKEASKIYIKEKGVGFISSFNSLKARVQHVKVQTL
FT LEKENRSAAEKIKAQLFAKEDIAELREFTAVTKEKNGLTKVVTETDDEGKSYKKEEPVE
FT VEVRRIKDTPEDREKAAAWIRAYIKIKNSSLSADELSMATIARYVDTLGERELLDMDSR
FT IYLKKCAFVLVPLPTPEDIDIQMAINSPAARAKREQLAILRAEGFLEGLCTEVGFESPF
FT SILGLPDISVTDGARLRKQSSCIHYLSQTSLGLAFQAPNASLHNALVAIERRVFTVGKG
FT DEAVFPPRPEYSDIFTDSMSYFSQAVVNKTGYCKVFPEPLLALSYRAGKRSQYFKAIES
FT LKIKPYEKKDSHVTAFLKKEKHWMTKPIAPRLICPRSKRYNVIVGTRLKFNEKRIMHAI
FT DSVFESPTVLSGYDSFQQGKIIANKWRKFSNPVAIGVDASRFDQHVSEQALKWEHSIYN
FT DLFNDPLLKEALEHQCDNNISMFVEDKMLRFRVRGHRMSGDINTSMGNKLIMCGMMHEY
FT FKSLDVRAELCNNGDDCVIICERKDEKKFKGMYEHFLSYGFNMVTEEPVYKLTKLEFCQ
FT SRPVQIYGKFQMVRRPDCIAKDSHTLLSMLGPEDVKSYMSAVAQCGLVLNSGVPILESF
FT YKCLYRSSGYKKVSEEYIKNVISYGTEERLQGRRTYKETPITHMSRMSYWESFGVDPLN
FT QKIVERYFDKLVVSAELQRVKVTTPHLQSILLSIPEKTPPSTQ"
FT CDS <1. .982
FT /codon_start=2
FT /gene="ORF1"
FT /product="RNA-dependent RNA polymerase P1"
FT /protein_id="AGN54054.1"
FT /translation="VKDFISHCYSRLRSIYYSLKRWLWEIQGKFKAHDAFVNMCYGHMS
FT DIEDFEIPLAGEFEVREGEMEIARAKLALMIAQRSEIGVTEAYGKYASLAGCVHVPVDY
FT KPSIKELEAAAESLEGHISEHLKAAKEASKIYIKEKGVGFISSFNSLKARVQHVKVQTL
FT LEKENRSAAEKIKAQLFAKEDIAELREFTAVTKEKNGLTKVVTETDDEGKSYKKEEPVE
FT VEVRRIKDTPEDREKAAAWIRAYIKIKNSSLSADELSMATIARYVDTLGERELLDMDSR
FT IYLKKCAFVLVPLPTPEDIDIQMAINSPAARAKREQLAILRAEGF"
FT gene 2683. .4566
FT /gene="ORF3"
FT CDS 2683. .4566
FT /codon_start=1
FT /transl_except=(pos:3283. .3285,aa:OTHER)
FT /gene="ORF3"
FT /product="aphid transmission protein P5"
FT /note="created by ribosomal read-through of the ORF3 stop
FT codon"
FT /protein_id="AGN54056.1"
FT /translation="MNSAGRRRNNRNVRKSKPKPKPRAVRTVVMVQPNGAGPRRRNNRR
FT SRGRGSNPLSGSAGRSEIFVFSVDGLKTNSSGILKFGPGLSQCPALSGGILKSYHRYKI
FT ANVKIQYKSHASSTTTGAIYIELDTSCTQSALGSTINSFSINQSGSKTFNTEQIDGKDY
FT RETTLNQFYLLYKGSESESNTAGQFIVTFRVMNTTPKXVDSSGPEPAPTPTPAPTPTPT
FT PTPKPAPEPAKRFFEYTGVPIVTIQTRETSDTIILNKFENQTLQYLEDETASTRTIEAW
FT WNGNNNVSAQAAFIFPVPEGSYSVNISCEGMQSVDHMGGTEDGYWIGLIAYNNSTTDNW
FT GVGNYQGCTITKFLATNTWRPGHKDLKLNECSFTDGQIVERDAVMSFHVTATIKNASFY
FT LMAPKTMKADKYNYVVSYGGYTNKRMEFGTITVTFDESGSEASRVKKHEGSMLRHNVVL
FT FNNWTDPLPNLPPQEAEHTAVMTGDSSPENSDTEAEKAYNLATRFIPDANEDVLPSKED
FT LSKKPMDSRGYTIPKPPARVEEPEVLDQYNYAPMYADDVRKAPSTSLYNTKPKNTGRTF
FT LSRFVESSRTADAGQSEATTSRMTREQLKEYTRIRNTWGLTAAKEYKASLE"
FT CDS 2683. .3285
FT /codon_start=1
FT /gene="ORF3"
FT /product="coat protein P3"
FT /protein_id="AGN54057.1"
FT /translation="MNSAGRRRNNRNVRKSKPKPKPRAVRTVVMVQPNGAGPRRRNNRR
FT SRGRGSNPLSGSAGRSEIFVFSVDGLKTNSSGILKFGPGLSQCPALSGGILKSYHRYKI
FT ANVKIQYKSHASSTTTGAIYIELDTSCTQSALGSTINSFSINQSGSKTFNTEQIDGKDY
FT RETTLNQFYLLYKGSESESNTAGQFIVTFRVMNTTPK"
FT gene 2717. .3187
FT /gene="ORF4"
FT CDS 2717. .3187
FT /codon_start=1
FT /gene="ORF4"
FT /product="movement protein P4"
FT /protein_id="AGN54058.1"
FT /translation="MSENQNPNQNLEQFGQWLWSSPMEQDPEDEITDAQEEEGQILYLD
FT QQAGLRYSFSQSTALRPTQVGSSSSAPVYRNAQRFQVEYLSPTTVTRSQTSRFSISHTR
FT PLLQPAQSILNSTLRAHNQPWVAQLTHSPSTNPAPKRSTRSKSMERITGKPR"
XX
SQ Sequence 4625 BP; 1439 A; 1124 C; 1052 G; 1010 T; 0 other;
kc559092 Length: 4625 13-JUN-2013 Type: N Check: 8252 ..
1 agtaaaggat ttcatttccc actgctacag tcgtctcagg agtatatatt
51 actctttaaa aagatggcta tgggaaatcc agggcaaatt taaggcccac
101 gacgcttttg tcaacatgtg ctatgggcac atgtctgaca tagaggactt
151 cgaaatcccc cttgcagggg agttcgaagt cagggagggc gagatggaaa
201 tcgcccgggc caagctggcg ctgatgatag cgcagcgctc cgaaatcgga
251 gttaccgaag cgtacggaaa atacgctagt cttgccgggt gcgtccatgt
301 gcccgtagac tacaaaccca gcatcaaaga gctggaagcc gcagcagaaa
351 gcctagaagg gcacatatca gaacatctga aagctgcgaa ggaagcctcc
401 aaaatctaca tcaaagaaaa aggtgtaggc ttcatctcct ccttcaactc
451 gctgaaagcc agagtgcagc acgtaaaagt gcaaacactc ctcgagaagg
501 agaaccgcag cgctgccgaa aagataaagg cacaactctt tgctaaagag
551 gacatcgcag agctgcgcga attcaccgcc gtcaccaagg agaaaaacgg
601 cctgaccaag gtcgtaacag agacggacga cgagggcaaa tcctacaaga
651 aagaggagcc cgtcgaggtg gaagtccggc gcatcaagga cacgccggag
701 gacagagaga aggccgctgc ttggatcagg gcctatatta aaattaagaa
751 ttcatcactc tctgcagatg aattgtcgat ggccacaatc gccaggtacg
801 tcgacaccct gggtgagcgc gaactcctgg acatggactc caggatttac
851 ttgaagaaat gcgcttttgt cctggtgcca ttgccaacac cagaggacat
901 tgacatccag atggcaatca acagccctgc tgctagagcc aaacgcgagc
951 agcttgcaat tcttagggct gagggttttt agaagggctc tgtacagagg
1001 tcggttttga gagtccattt tccatcctgg gactccccga catctctgtc
1051 acagacggag cccgtttacg taaacagtct agttgcattc attaccttag
1101 tcagactagt ttaggattag cgtttcaggc gcctaacgcc tcattgcaca
1151 atgcattagt agcaatagaa aggagggtct tcaccgttgg gaaaggtgat
1201 gaagcagttt tccccccacg gccagaatat agcgatatat tcactgacag
1251 catgtcctat ttttcccaag ctgtcgtgaa caaaacggga tactgcaagg
1301 tttttccaga accattatta gcgctcagtt atcgcgcagg aaaaaggtcc
1351 cagtacttca aagccattga atccttgaaa atcaagccat acgaaaagaa
1401 ggattcacat gtgactgcat ttttgaagaa agaaaaacac tggatgacca
1451 agcccatagc tccaagactg atttgcccga gatccaagag atacaatgtc
1501 atagtaggga ctcggctcaa attcaatgag aaaaggatca tgcatgccat
1551 tgatagcgtg tttgagtctc ccaccgtcct atcaggatac gactctttcc
1601 aacagggaaa aattatagcc aacaaatggc gaaaattctc caaccctgtt
1651 gctattggcg ttgatgccag tagatttgac caacacgtat ccgagcaagc
1701 tttaaagtgg gagcatagca tatacaacga cttgttcaac gatcctctac
1751 tgaaggaggc gttagagcac caatgtgaca acaacataag catgttcgtt
1801 gaagataaga tgctaagatt cagagtcagg gggcacagaa tgtctggtga
1851 catcaacacc agtatgggaa acaagctcat catgtgcggc atgatgcatg
1901 aatatttcaa gagcttggat gtaagagcag aattgtgcaa caacggggat
1951 gactgtgtca ttatatgtga aaggaaggat gaaaagaaat tcaaaggcat
2001 gtatgaacac ttcctttctt atggcttcaa catggtcact gaagaacccg
2051 tgtacaagct aacgaagctt gaattctgcc agtcgcgacc agtccaaata
2101 tacggcaaat ttcaaatggt aagaaggccg gactgcatcg ccaaggatag
2151 ccacacactt ttgagtatgc taggcccaga ggatgtgaaa tcctacatgt
2201 cggccgttgc acagtgtgga cttgtcctca attccggggt acccattctg
2251 gaaagcttct acaagtgctt gtatcgaagc tctgggtaca agaaagtatc
2301 agaggagtac attaaaaacg tcatttcata tggaactgaa gagaggctac
2351 aaggtagacg tacctataaa gaaacgccta ttacccatat gagcaggatg
2401 agttactggg aatcattcgg agttgacccc ctaaaccaaa aaattgtcga
2451 gcggtacttt gacaaattgg tggtcagtgc tgaactccag agagtgaagg
2501 tgactactcc acatctgcaa tccatactcc tctccatccc ggagaaaacc
2551 cctccaagca cacaatagat tttcattttc ttacaggctt aggaataggt
2601 ttcattttag ctatcccttg tactttagct ttagtctatt tcatttacaa
2651 taaagtttca gacaccaccc gcgaggtcgt gaatgaattc agcaggccgt
2701 aggagaaaca atcggaatgt cagaaaatca aaacccaaac caaaacctcg
2751 agcagttcgg acagtggtta tggtccagcc caatggagca ggacccagaa
2801 gacgaaataa ccgacgctca agaggaagag ggtcaaatcc tttatctgga
2851 tcagcaggcc ggtctgagat attcgttttc tcagtcgacg gccttaagac
2901 caactcaagt gggatcctca agttcggccc cggtctatcg caatgcccag
2951 cgctttcagg tggaatactt aagtcctacc accgttacaa gatcgcaaac
3001 gtcaagattc agtataagtc acacgcgtcc tctactacaa ccggcgcaat
3051 ctatattgaa ctcgacactt cgtgcacaca atcagccctg ggtagcacaa
3101 ttaactcatt ctccatcaac caatccggct ccaaaacgtt caacacggag
3151 caaatcgatg gaaaggatta ccgggaaacc acgctgaacc agttctacct
3201 cctttacaag ggcagtgaat cagaatcaaa cactgcaggg cagttcatcg
3251 tcactttcag agtgatgaat acgaccccca aataggtaga ctcctcagga
3301 ccagaaccag ctccaactcc gactccagcc ccaactccaa caccaactcc
3351 aaccccaaaa cctgcccccg aacctgccaa aagattcttc gaatacacag
3401 gtgttccgat cgtgacaatt cagaccagag agacatcgga cacgataatc
3451 ttgaacaaat tcgagaatca aacgcttcaa tacttagagg atgaaacagc
3501 ctcaaccaga acaattgaag cctggtggaa cggaaacaat aacgtgtcag
3551 ctcaggctgc atttattttt ccggtgccag aaggcagtta ctctgtcaac
3601 atttcatgcg aaggcatgca gtcggttgac catatgggag gcacagaaga
3651 tggatattgg ataggcctca ttgcctacaa caattccaca acagacaact
3701 ggggagttgg gaattatcaa ggctgtacca tcacaaagtt cctggcaaca
3751 aatacgtgga ggccaggaca caaagatctt aaattgaatg aatgttcatt
3801 cacagatggt caaatagtcg agagagatgc cgttatgtct tttcacgtaa
3851 cggctactat caaaaatgcc tcattctacc tcatggctcc taagaccatg
3901 aaggctgaca agtacaatta tgttgtatcc tacggagggt acaccaacaa
3951 aagaatggaa tttggcacaa ttaccgtcac atttgacgag tctggttctg
4001 aggcatctcg ggttaagaag catgaaggct ccatgcttag acacaatgta
4051 gtactcttta ataactggac ggatcccctt ccgaatctac cgccacaaga
4101 agccgaacac actgcggtca tgacagggga ttcatcacca gagaattctg
4151 acaccgaagc tgagaaagca tataatctgg caactaggtt catacctgat
4201 gctaatgagg acgtactacc ctcaaaagaa gatctcagca agaaaccaat
4251 ggacagtcgg ggctatacaa tacctaagcc cccagcgaga gtcgaggaac
4301 ctgaagtact cgaccaatac aactacgcac caatgtacgc tgatgacgtc
4351 cgcaaagctc ctagcacctc cttatacaac acaaaaccca aaaacacagg
4401 tagaactttt ctaagtagat ttgtagagtc tagtagaaca gctgacgcag
4451 gccagtctga agccaccaca tccaggatga ctagggaaca actcaaagag
4501 tacacccgca ttagaaacac ctggggcttg actgctgcca aagaatacaa
4551 ggcttcctta gagtgaaggt aatcaccctc cacacttctc gccactgcca
4601 gataacggat cctgggaaac aggca