Sequence of DPV Barley yellow dwarf virus Ker-II
Barley yellow dwarf virus Ker-II isolate K439, complete genome.
ACC No: KC571999
Dated: 2013-06-13 | Length: 5736 | CRC: -1171403849
ID KC571999; SV 1; linear; genomic RNA; STD; VRL; 5736 BP.
XX
AC KC571999;
XX
DT 13-JUN-2013 (Rel. 117, Created)
DT 13-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE Barley yellow dwarf virus Ker-II isolate K439, complete genome.
XX
KW .
XX
OS Barley yellow dwarf virus Ker-II
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Luteoviridae;
OC Luteovirus; unclassified Luteovirus.
XX
RN [1]
RP 1-5736
RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.;
RT "Distribution of Barley yellow dwarf virus-PAV in the sub-Antarctic
RT Kerguelen Islands and characterization of two new Luteovirus species";
RL Unpublished.
XX
RN [2]
RP 1-5736
RA Svanella-Dumas L., Candresse T., Hulle M., Marais A.;
RT ;
RL Submitted (01-FEB-2013) to the INSDC.
RL UMR 1332 Biologie du Fruit et Pathologie, INRA, 71 Avenue Edouard
RL Bourleaux, Villenave d'Ornon Cedex, CS 20032 33883, France
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Mega v. 5.02
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1. .5736
FT /organism="Barley yellow dwarf virus Ker-II"
FT /host="Poa cookii"
FT /isolate="K439"
FT /mol_type="genomic RNA"
FT /country="France:Kerguelen Islands TC13"
FT /collection_date="2009"
FT /PCR_primers="fwd_seq: agtgaagattgacc, rev_seq:
FT gctcttgtgtccaccttac"
FT /db_xref="taxon:1304863"
FT 5'UTR 1. .154
FT gene 155. .2757
FT /gene="ORF1"
FT CDS join(155. .1171,1171. .2757)
FT /codon_start=1
FT /ribosomal_slippage
FT /gene="ORF1"
FT /product="RNA-dependent RNA polymerase P1-P2 fusion"
FT /note="RdRp"
FT /protein_id="AGN54060.1"
FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWELQGKFK
FT AHDAFVNMCYGHMSDIEDFEIPLAGEFEVREGDLEIARAKLALLIAQHSDIGVTEAYGK
FT YASLTGSIPVPEDYKPSVKELGSAADSVESLISEHLQAAREASKIYIKEKGVGFINSFN
FT SLKARFKHVKEQTLLFKHNEEAASKIKQQLFAVENIDELHNFTEVTQEENGLKKTIIKE
FT VNGEEQYFEMPIKVDVRRIKDTPVDREKAATWIRAYIKAKNSSLTADELSFATIPKYIE
FT NLAAKHDLSAESRTYLTKCALIMVPLPTSEEIAIKMTVQSPAARSRREQIEILDARGFL
FT DGLCSETGFESPFSELGLPEISVTDGARIRKQSSKIHFLSQTSLGLVFQAPNASLHNAL
FT VAVERRVFTVGKGNEITLPPRPELDIFTESMKYFSDEIVNQVGCCKVFSPEFLAFSYSS
FT GKRSQYLKAIESLKMKPYEEKDSHVTAFLKKEKHWMTKPIAPRLICPRTKRYNIILGTH
FT LKFNEKKIMHAIDCVFGSPTVLSGFDSFQQGKVIARKWRKFSNPVAIGVDASRFDQHVS
FT EQALMWEHSIYNDIFNDPFLKTALSHQLNNNILMFVDDKMLRFKVKGHRMSGDINTSMG
FT NKLIMCGMMHAYFKSLNVDAELCNNGDDCVIICERKDEAKFAGMYDFFLKYGFNLVTEH
FT PVYELEKLEFCQSRPVCVNGKYRMVRRPDCISKDSHTLLSMLGQEDVKSYMSAVAQCGL
FT VLNSGVPILESFYECLYRSSGYKKVSEEYIKNVISYGTEERLQGRRARQIEPITLGTRL
FT SYWETFGVDPRTQEIVERYFNSLTISTQLQRVKVTTPHMQSILLSIPEKNPPATQ"
FT CDS 155. .1174
FT /codon_start=1
FT /gene="ORF1"
FT /product="RNA-dependent RNA polymerase P1"
FT /protein_id="AGN54059.1"
FT /translation="MVFFELLIGASVKAVKDFISHCYSRLKSIYYSLKRWLWELQGKFK
FT AHDAFVNMCYGHMSDIEDFEIPLAGEFEVREGDLEIARAKLALLIAQHSDIGVTEAYGK
FT YASLTGSIPVPEDYKPSVKELGSAADSVESLISEHLQAAREASKIYIKEKGVGFINSFN
FT SLKARFKHVKEQTLLFKHNEEAASKIKQQLFAVENIDELHNFTEVTQEENGLKKTIIKE
FT VNGEEQYFEMPIKVDVRRIKDTPVDREKAATWIRAYIKAKNSSLTADELSFATIPKYIE
FT NLAAKHDLSAESRTYLTKCALIMVPLPTSEEIAIKMTVQSPAARSRREQIEILDARGF"
FT gene 2872. .4875
FT /gene="ORF3"
FT CDS 2872. .4875
FT /codon_start=1
FT /transl_except=(pos:3460. .3462,aa:OTHER)
FT /gene="ORF3"
FT /product="aphid transmission protein P5"
FT /note="created by ribosomal read-through of the ORF3 stop
FT codon"
FT /protein_id="AGN54061.1"
FT /translation="MNSVGRRRASKNVRARSNRTVRPVVVVRTNPNGRRRRAPRRPRRG
FT RANPILGPAGRSEVFVFSINDIKANSSGVIKFGPDLSQCPALSSGILKSYHRYKISNVK
FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS
FT VNQFYLLFKANGVTSDTAGQFIITLRVSNMTPKXVDSSTPGPGPKPKPDPTPTPAPEPK
FT TPKRFFEFIGTPSGVIQTRESSDSISVSKLGDQTFQKIENEKSNDVFLSSYWQYSNSVY
FT AQAAFVIPIYQGSYSVNISCEGMQSVDHIGGEQDGYWIGLIAYSNSTDDVWGVGNYQGC
FT TITKYLVTNSWRPGHQDLKLNDCAFDKGQIVERDAVLSFHVEAVGDNPSFYLLAPKTQK
FT TDKYNYVVSYGGYTNKKMEFGTIAITCDESDVEALRNARHANYPIKENHQELYHGSGTL
FT LPAYSPDRVEVYPDITSSERTVQPRPSEEPKFRDIQNQEELSSLFDLYDLATSEIPDAR
FT EDVLPTKQEMSKKPIDSLGTEIPRPRSMSPEYPRPRSRSPEYPRPRSRSPEPIGTYHGQ
FT NIYDDDVPKQVAERLREAAELPSTMLYNRKPKNRNSSFLSRFIEQNKSPDATAPSEATT
FT SRMTRDQLKEYTRVRNQYGLTAAKQYKASLGQ"
FT CDS 2872. .3462
FT /codon_start=1
FT /gene="ORF3"
FT /product="coat protein P3"
FT /protein_id="AGN54062.1"
FT /translation="MNSVGRRRASKNVRARSNRTVRPVVVVRTNPNGRRRRAPRRPRRG
FT RANPILGPAGRSEVFVFSINDIKANSSGVIKFGPDLSQCPALSSGILKSYHRYKISNVK
FT IEFKSHASSTTVGAMFIELDTACTQSTLGSYINSFTLSKSGTKTFNAQQIAGKEFRETS
FT VNQFYLLFKANGVTSDTAGQFIITLRVSNMTPK"
FT gene 2906. .3364
FT /gene="ORF4"
FT CDS 2906. .3364
FT /codon_start=1
FT /gene="ORF4"
FT /product="movement protein P4"
FT /protein_id="AGN54063.1"
FT /translation="MSEPGAIEQFGQWLWSGPIQMDEDVEPLDAQEEEGQILYLDQQAG
FT LRYSYSQSTILKPIPQGSSNSAPIFHNVQRFQAEYLSPTTVTRSQMSRSSLSHTRPPLQ
FT SALCLLNSTPRAHNQPWVATLTHSPSPSQEPKRLMPSKSLAKSSGRRR"
FT gene 5005. .5115
FT /gene="ORF6"
FT CDS 5005. .5115
FT /codon_start=1
FT /gene="ORF6"
FT /product="P6"
FT /protein_id="AGN54064.1"
FT /translation="MGGLEVIAVCMIAIVFLQAVGTIVNMCICVGAIAAA"
FT 3'UTR 5113. .5736
XX
SQ Sequence 5736 BP; 1714 A; 1392 C; 1252 G; 1378 T; 0 other;
kc571999 Length: 5736 13-JUN-2013 Type: N Check: 9723 ..
1 agtgaagatt gacccctcac caaagttctc ttgtgctaga gagacacggc
51 tcaccctttt tgtcttaggg aagtcgtttg caaaggtcac agcgtcgcct
101 gactcgccgc tgccacccca cctatacatc cccccccccc tttccatcgt
151 agatatggtg ttctttgagc tcctgattgg agctagcgtc aaagccgtaa
201 aggatttcat ctcccactgc tacagccgcc taaagagtat ttattactct
251 ttgaaacggt ggctatggga gctacagggc aaattcaagg cccatgacgc
301 ctttgtcaac atgtgctatg ggcacatgtc tgacattgaa gatttcgaga
351 tcccccttgc tggtgagttc gaagtcaggg agggcgatct ggagatcgcg
401 agagcaaagc tggcgctact gattgcgcag cactccgaca tcggggtaac
451 cgaggcgtac gggaaatacg ctagtcttac tgggagcata cctgtaccag
501 aggactataa accaagcgtc aaagaactag gttccgcggc tgatagtgtg
551 gaatcactaa tatccgagca cctgcaagcc gccagagaag cttccaaaat
601 ctacatcaaa gagaaaggtg taggttttat caattctttc aattcactca
651 aagctcgatt caagcatgta aaagagcaaa cacttctgtt caagcacaat
701 gaggaagcag caagcaagat caaacagcaa ctttttgctg tggaaaatat
751 tgatgagctg cataacttta cagaagtcac tcaagaggaa aatggcctaa
801 agaaaaccat tatcaaggag gttaatggcg aggagcaata cttcgaaatg
851 cctattaaag ttgacgtccg cagaatcaaa gatactcctg ttgacaggga
901 gaaagccgct acttggatta gggcctacat caaggccaag aattcaagtt
951 taactgccga cgaactctca ttcgccacca tccccaaata cattgaaaat
1001 cttgcggcca aacatgactt gtctgctgaa agtcgcacgt accttaccaa
1051 gtgcgctttg ataatggtcc ccctgcctac aagcgaggaa atcgcaatca
1101 aaatgaccgt tcaatcccct gctgctcgtt ctagacgcga gcagatagaa
1151 attcttgacg ctaggggttt ttagatgggc tctgttccga gacaggtttt
1201 gaaagcccct tttctgaact tggcttacct gaaatctcgg tcacagatgg
1251 agcccgtatt cgtaaacagt ctagtaaaat tcatttccta tcgcaaacta
1301 gtttaggatt agttttccaa gcccccaatg ccagcctaca taatgcactc
1351 gtagccgttg aaaggagagt tttcaccgtt ggaaaaggaa atgaaataac
1401 actccccccg agaccagaac ttgacatttt cactgaatca atgaaatact
1451 tctcggacga aattgtaaat caagtggggt gttgtaaggt tttctctcct
1501 gagtttctcg ctttcagtta ctcttccgga aaaaggtcac aatatcttaa
1551 ggcaatagaa tcccttaaaa tgaaaccata tgaagaaaag gattctcatg
1601 taactgcctt cctcaagaaa gaaaaacatt ggatgaccaa gcccattgcc
1651 cccagactca tatgccccag aaccaagcga tacaatatta ttctgggaac
1701 ccacctcaag tttaacgaaa agaagatcat gcacgctatt gattgtgtgt
1751 ttggatcccc cacagtactc tcaggtttcg actcatttca acaaggaaag
1801 gtcatagcca gaaagtggcg aaaattttct aatcctgttg ctatcggagt
1851 cgatgccagt cgttttgatc agcacgtatc agaacaggct ctaatgtggg
1901 aacatagcat ctacaacgat atattcaatg atccgtttct caaaacggca
1951 ctgtcacatc aactgaacaa taatatattg atgtttgtag atgacaagat
2001 gttgaggttt aaagtcaagg gacaccgtat gtccggtgat ataaacacaa
2051 gcatggggaa taagctcatt atgtgtggca tgatgcatgc ttatttcaaa
2101 tcactaaatg tcgacgcaga actttgtaat aacggagacg attgtgtcat
2151 tatttgcgaa aggaaagacg aagccaaatt tgctggcatg tacgacttct
2201 ttctcaagta tggattcaat ctggttactg aacaccccgt ttatgaactt
2251 gaaaagctag agttctgcca atcgagacct gtttgtgtaa atggaaagta
2301 tagaatggta cgcagacctg attgtatatc aaaagacagc cataccttgt
2351 tgagtatgct cggccaagag gacgtcaagt cctatatgtc ggccgttgct
2401 cagtgtggtc tagtcttgaa ttctggcgtt ccgattctcg aaagcttcta
2451 cgagtgcctg taccgaagta gcggttataa gaaagtatct gaggagtaca
2501 tcaaaaacgt catatcctat ggtacggagg aaaggcttca gggtagacgt
2551 gcccgccaaa tcgagcctat taccctaggg acaagactca gttactggga
2601 aacatttgga gttgatccaa ggacacaaga aattgttgag aggtacttca
2651 acagtctaac gatcagtact cagctccaaa gagtgaaggt gacaactcca
2701 cacatgcaat caatccttct ctcaatccca gagaaaaatc cacccgctac
2751 acaatagatt ttcacttcct aactggctta ggaataggtt tcattttagc
2801 aattccctgt acattagctc tcacttactt catttacaat aaagtttcag
2851 acaccactag agaggtggtg aatgaattca gtaggccgta gaagagcaag
2901 caagaatgtc agagccagga gcaatagaac agttcggcca gtggttgtgg
2951 tccggaccaa tccaaatgga cgaagacgtc gagcccctcg acgcccaaga
3001 agaggaaggg caaatcctat acttggacca gcaggcaggt ctgaggtatt
3051 cgtattctca atcaacgata ttaaagccaa ttcctcaggg gtcatcaaat
3101 tcggccccga tctttcacaa tgtccagcgc tttcaagcgg aatacttaag
3151 tcctaccacc gttacaagat ctcaaatgtc aagatcgagt ttaagtcaca
3201 cgcgtcctcc actacagtcg gcgctatgtt tattgaactc gacaccgcgt
3251 gcacacaatc aaccttgggt agctacatta actcattcac cctctccaag
3301 tcaggaacca aaacgtttaa tgcccagcaa atcgctggca aagagttcag
3351 ggagacgtcg gtaaatcagt tttatttatt gttcaaagct aacggtgtta
3401 catctgacac tgcaggacaa ttcattatca ccttgcgggt ttcaaacatg
3451 actcccaaat aggtagactc ctcaacacca ggacccggcc caaagccaaa
3501 accagacccc acaccaaccc cagcccctga gcctaaaacc cccaagagat
3551 ttttcgagtt tatcggaaca ccttctgggg taatccaaac cagggaatca
3601 tcggacagca tttctgtgtc caagctggga gatcagacat tccaaaagat
3651 cgagaatgag aagtcaaatg acgtctttct ctcttcttac tggcaataca
3701 gtaacagtgt ttacgcccaa gctgcctttg taattccaat ttaccaaggt
3751 agctacagcg ttaacatttc atgtgaagga atgcaatctg tagatcacat
3801 aggaggggaa caagatggtt attggatagg tttgatagcc tactccaatt
3851 cgacagacga tgtctggggc gtcgggaatt accaaggatg cacaatcacg
3901 aaatacctcg tcaccaattc ttggagacca ggccatcaag acttaaaact
3951 caatgattgt gcgttcgaca aaggccaaat cgtagaaaga gacgcagtct
4001 tatcgttcca tgtagaagct gttggtgaca accccagttt ctacttacta
4051 gcaccaaaaa cgcaaaagac tgacaagtac aactatgttg tctcctacgg
4101 tggctacacc aacaagaaaa tggaatttgg aacaatagcc attacttgtg
4151 atgaatctga tgttgaggca ctccgcaatg caagacatgc aaactacccc
4201 atcaaggaaa accaccaaga attatatcat ggttcgggta ctttgctacc
4251 tgcctactcg cctgatagag tagaagtcta tcctgatatc actagctctg
4301 agcgaacggt tcaaccccgt cctagtgaag aacccaaatt tcgagatatc
4351 caaaatcagg aagaactttc aagtctattt gacttgtacg atctcgccac
4401 ctctgaaata cccgacgcaa gggaagatgt tttaccaacc aagcaagaaa
4451 tgagcaaaaa gccaattgac agcttgggca ctgaaattcc acgccctagg
4501 tctatgtccc cagagtatcc acgaccacgg tcacgctctc cggagtatcc
4551 ccgacctcgg tcacgatccc ctgaacccat aggaacctac catggccaaa
4601 acatctatga cgatgacgtc cccaaacaag tggctgagag gcttagagaa
4651 gccgctgaat tgccttctac tatgctctat aaccgaaaac ccaaaaacag
4701 aaattctagt tttctttccc gtttcattga acaaaataaa tcaccagatg
4751 ccaccgcccc ttccgaggct accacctcgc gaatgacccg agatcagctg
4801 aaagaataca ctcgtgttag gaatcagtat ggtctcaccg ctgctaagca
4851 atacaaagct tcacttggac agtgaaggtg aaagactgca ctctttcaca
4901 ccacctacca ctggcaaaag acggatcctg ggaaacaggc agtgcttagg
4951 cacgtaagct cggggatact agtcatatcc cgccgcatca cttttgtctg
5001 gccgatgggt gggctggagg tcattgctgt ctgtatgata gcaattgtgt
5051 tccttcaagc agtcggtacc attgtaaata tgtgcatctg tgtcggcgcc
5101 attgctgccg cataaaccaa aatgccattg cactgtgagc aacggcacac
5151 aaaaacaaag acgggagctc ttagctcagg aaagaggtca atcacctcat
5201 gacaggctgg tctaggtgga cttgaataac ccaccgcaag acaactggaa
5251 acccaccaga gaacaaataa ggtagcttgc ttctgagcta ttcactgccc
5301 cagtaacgtc tgggtaaaca aaacttcaca ccaccccgat gagaagaggg
5351 gagagtgtgc ggggttaggg atcccgtgat ataccctaga tcgtcgtggc
5401 ttgaggacgt taaaacgcaa cgaccttatt aagtcgttaa actgatagtc
5451 atctcccgag tgatgacccc tacccatgac ttataggaac gatacgaaac
5501 gttctactac ccgatgccgg aaccccctcg cggtcggcct ggatgagaaa
5551 ccaggattac atccggtagt tggctcgaat ggccatagca caagtcaggt
5601 actagggaaa aatactttgg aagcgagccc atgcgggcct ccgagttgcc
5651 agccggcaag acaactcgtg agtatcttca ctggtaacag tgaaggggtc
5701 cgacatattg acaggtggct cttgtgtcca ccttac