Sequence of DPV Potato virus Y

Potato virus Y isolate SP9 capsid protein gene, partial cds.

ACC No: KC677691

Dated: 2013-05-20 | Length: 801 | CRC: -985605026

                
ID   KC677691; SV 1; linear; genomic RNA; STD; VRL; 801 BP.
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AC   KC677691;
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DT   20-MAY-2013 (Rel. 116, Created)
DT   20-MAY-2013 (Rel. 116, Last updated, Version 1)
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DE   Potato virus Y isolate SP9 capsid protein gene, partial cds.
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KW   .
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OS   Potato virus Y
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-801
RA   Marin M., Henao E., Gutierrez P.;
RT   "Phylogenetic analysis of Potato virus Y (PVY) isolates obtained in potato
RT   (Solanum tuberosum) and tamarillo (Solanum betaceum) crops from Colombia";
RL   Unpublished.
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RN   [2]
RP   1-801
RA   Marin M., Henao E., Gutierrez P.;
RT   ;
RL   Submitted (21-FEB-2013) to the INSDC.
RL   Biosciences, Universidad Nacional de Colombia sede Medellin, Autopista
RL   Norte Cra 65 x Calle 64, Medellin, Antioquia, Colombia
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: Bioedit v. 7.0.5.3
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .801
FT                   /organism="Potato virus Y"
FT                   /host="Solanum tuberosum subsp. andigena"
FT                   /isolate="SP9"
FT                   /mol_type="genomic RNA"
FT                   /country="Colombia"
FT                   /isolation_source="leaf"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:12216"
FT   CDS             <1. .>801
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="Coat"
FT                   /protein_id="AGL72205.1"
FT                   /translation="RNDTIDAGGSTKKDAKQEQGSIQPNLNKEKEKDVNVGTSGTHTVP
FT                   RIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDTWYEAVQLAYDIG
FT                   ETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVENAKPTLRQIMAHF
FT                   SDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSRTPVRAREAHIQMKA
FT                   AALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKNM"
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SQ   Sequence 801 BP; 229 A; 188 C; 237 G; 147 T; 0 other;

kc677691 Length: 801  20-MAY-2013  Type: N  Check: 5182  ..

       1  cgtaacgata ccattgatgc gggcggcagc accaaaaaag atgcgaaaca
      51  ggaacagggc agcattcagc cgaacctgaa caaagaaaaa gaaaaagatg
     101  tgaacgtggg caccagcggc acccataccg tgccgcgtat taaagcgatt
     151  accagcaaaa tgcgtatgcc gaaaagcaaa ggcgcgaccg tgctgaacct
     201  ggaacatctg ctggaatatg cgccgcagca gattgatatt agcaacaccc
     251  gtgcgaccca gagccagttt gatacctggt atgaagcggt gcagctggcg
     301  tatgatattg gcgaaaccga aatgccgacc gtgatgaacg gcctgatggt
     351  gtggtgcatt gaaaacggca ccagcccgaa cattaacggc gtgtgggtga
     401  tgatggatgg cgatgaacag gtggaatatc cgctgaaacc gattgtggaa
     451  aacgcgaaac cgaccctgcg tcagattatg gcgcatttta gcgatgtggc
     501  ggaagcgtat attgaaatgc gtaacaaaaa agaaccgtat atgccgcgtt
     551  atggcctggt gcgtaacctg cgtgatggca gcctggcgcg ttatgcgttt
     601  gatttttatg aagtgaccag ccgtaccccg gtgcgtgcgc gtgaagcgca
     651  tattcagatg aaagcggcgg cgctgaaaag cgcgcagagc cgtctgtttg
     701  gcctggatgg cggcattagc acccaggaag aaaacaccga acgtcatacc
     751  accgaagatg tgagcccgag catgcatacc ctgctgggcg tgaaaaacat
     801  g