Sequence of DPV Tomato chlorotic mottle virus
Tomato chlorotic mottle virus isolate BR:Flo209:08 segment DNA-A, complete sequence.
ACC No: KC706559
Dated: 2013-05-12 | Length: 2624 | CRC: -1665689216
ID KC706559; SV 1; circular; genomic DNA; STD; VRL; 2624 BP.
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AC KC706559;
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DT 24-MAR-2013 (Rel. 116, Created)
DT 12-MAY-2013 (Rel. 116, Last updated, Version 2)
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DE Tomato chlorotic mottle virus isolate BR:Flo209:08 segment DNA-A, complete
DE sequence.
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KW .
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OS Tomato chlorotic mottle virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
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RN [1]
RP 1-2624
RX PUBMED; 23487451.
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T., Silva F.N., Xavier C.A.,
RA Hora-Junior B.T., Beserra-Junior J.E., Malta A.W., Martin D.P., Varsani A.,
RA Alfenas-Zerbini P., Mizubuti E.S., Zerbini F.M.;
RT "Brazilian begomovirus populations are highly recombinant, rapidly
RT evolving, and segregated based on geographical location";
RL J. Virol. 87(10):5784-5799(2013).
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RN [2]
RP 1-2624
RA Rocha C.S., Castillo-Urquiza G.P., Lima A.T.M., Silva F.N., Xavier C.A.D.,
RA Hora-Junior B.T., Beserra-Junior J.E.A., Malta A.W.O., Martin D.P.,
RA Varsani A., Alfenas-Zerbini P., Mizubuti E.S.G., Zerbini F.M.;
RT ;
RL Submitted (26-FEB-2013) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, MG 36570-000, Brazil
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CC ##Assembly-Data-START##
CC Assembly Method :: DNAman v. 7
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
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FH Key Location/Qualifiers
FH
FT source 1. .2624
FT /organism="Tomato chlorotic mottle virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Flo209:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /db_xref="taxon:172391"
FT CDS 200. .955
FT /codon_start=1
FT /product="coat protein"
FT /note="CP"
FT /protein_id="AGH29723.1"
FT /translation="MPKRDAPWRHMASTVKISRGVNSSPRAGVGPRSNKASDWVNRPMY
FT RKPKIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHTGKVMCVSDVTRGNGITHRVGKRF
FT CVKSVYILGKIWMDENIKLKNHTNSAMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(952. .1350)
FT /codon_start=1
FT /product="replication-enhancer protein"
FT /note="REN"
FT /protein_id="AGH29724.1"
FT /translation="MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDILYKRTRVY
FT HVQIRFNHNLRRVLGLHKAYLNFQIWTTSLRASGMTYLNRFKYLVMLYIDQLGVISVNN
FT VIRAVRFATDKQYVNAVLENHSIKFKIY"
FT CDS complement(1097. .1486)
FT /codon_start=1
FT /product="transactivating protein"
FT /note="TRAP"
FT /protein_id="AGH29726.1"
FT /translation="MHNSSSSTPPSIKVQHRAAKKRAIRRRRIDLQCGCSIFVHIDCAG
FT HGFTHRGTHHCTSGREWRVYLGNIKSPLFQDVQRRGHTIQEDQSLPRPNTVQPQPEEST
FT GSPQGLSQLPNLDDIPESFWDDIFK"
FT CDS complement(1428. .2483)
FT /codon_start=1
FT /product="replication-associated protein"
FT /note="REP"
FT /protein_id="AGH29725.1"
FT /translation="MPPPRHFRVNSKNYFLTYPHCSLSKEEALSQLLALNTPTNKLFIR
FT VSRELHEDGQPHLHVLIQFEGKYNCKNNKFFDLVSPSRSAHFHPNIQGAKSSSDVKSYV
FT EKDGDFVDHGVFQIDGRSTRGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQHH
FT NIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQDWADDYFGRDAAARPERPISIIIEG
FT DSRSGKTMWSRALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELLGAQ
FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKDENSALSSWTKHNAQFIFLN
FT SPLYQSSTSGC"
FT CDS complement(2033. .2326)
FT /codon_start=1
FT /product="AC4 protein"
FT /note="AC4"
FT /protein_id="AGH29722.1"
FT /translation="MGNLISTCSSNSKENTTAKITSSSTSSPQVGQHISIQTYRELRAR
FT QMSNHTWKKTETSLIMEFSRSMADQLEEVSNLPTTRTPRFSTQDLSWKHSIY"
XX
SQ Sequence 2624 BP; 688 A; 551 C; 600 G; 785 T; 0 other;
kc706559 Length: 2624 12-MAY-2013 Type: N Check: 4513 ..
1 accggatggc cgcgcgattt ttttttaagg cccattcagt ttgggccgct
51 cttttgggcc ttcaccttta attttaatga aattaaattt ggcccaatca
101 tgatgcatct gacaagctaa gatatttaca actacttaac gcccaagttg
151 cataacggct ataaattaaa cgtgcatatg tcgttaactt taattcaaaa
201 tgcctaagcg cgatgcccca tggcgccaca tggctagtac agttaagatt
251 agccggggcg ttaatagttc tcctcgagca ggagttgggc cacggtctaa
301 caaggcctct gactgggtaa acaggcccat gtacaggaag cccaagatat
351 atcggatgta tagaacaccc gatgttccaa gaggttgtga aggcccatgt
401 aaagtccaat cgtttgaaca gcgtcacgat atctcccata ctggtaaggt
451 gatgtgcgtc tccgatgtca cccgtggtaa cggtattaca catcgtgtgg
501 gtaagcgttt ctgtgttaag tctgtgtata tcctgggtaa gatatggatg
551 gatgagaaca tcaagttgaa gaaccacacg aacagtgcca tgttttggtt
601 ggtcagggac cgtagaccgt atggcacccc tatggacttt ggccaggtgt
651 ttaacatgtt tgacaacgag cctagcaccg ccactgtgaa aaacgatctc
701 cgtgatcgtt ttcaagttat gcacaagttt tatgctaagg tcacaggtgg
751 acaatacgca agcaacgagc aggcgcttgt caagcggttt tggaaggtca
801 acaatcatgt cgtctataac catcaagaag ccggaaagta cgagaatcat
851 acggagaatg ccctgttatt gtatatggca tgtactcatg cctcaaaccc
901 cgtgtatgca actttaaaaa ttcggatcta tttttatgat tcgataacaa
951 attaataaat tttgaatttt attgaatgat tctcgagtac agcatttaca
1001 tattgtttgt ctgtggcgaa gcgtacagct ctaattacat tattaactga
1051 aataacgcct agctgatcaa tgtacaacat aactaaatat ttaaatctat
1101 ttaaatatgt catcccagaa gctctcaggg atgtcgtcca gatttggaag
1151 ttgagataag ccttgtggag acccagtact ctcctcaggt tgtggttgaa
1201 ccgtatttgg acgtggtaga ctctggtcct cttgtatagt atgtcctcga
1251 cgttgtacat cttgaaataa aggggatttg atatttccca agtatacacg
1301 ccattctctg cctgatgtgc agtgatgagt tcccctgtgc gtgaatccat
1351 gtcctgcgca atctatgtgt acgaaaatgg agcagccgca ctgtaaatca
1401 attcgtcttc ttcgtatagc tctcttctta gcagcccgat gttgaacttt
1451 gatagagggg ggagttgagg aagatgaatt gtgcattgtg ctttgtccaa
1501 ctacttaatg ctgagttttc atccttgtcg aggaaacatt tatagctggc
1551 cccctcgcca ggattgcaga gcacgatgca tgggatacca cctttaattt
1601 gaactggctt tccgtattta cagtttgatt gccaatcctt ttgggcccca
1651 agcaattctt tccagtgctt taactttaga tagtgcggtg cgacatcatc
1701 aatgacgtta tactgcacat cgtttgagta gacctttgaa ttgaaatcga
1751 ggtgaccact caagtaatta tgggacccta atgcacgtga ccacatcgtt
1801 ttgccacttc gagaatcacc ctcgattatt atactgatag gtctctccgg
1851 ccgcgcagcg gcatctctcc cgaaatagtc atctgcccaa tcttgcatct
1901 cgacaggcac gttagtgaac gacgagagtg gaaacggagg aacccaaggt
1951 tctggagcct ttgcgaaaat acgctctaaa tttgacctaa tgttatgatg
2001 ttgaagcacg aaatctttgg gttgttcctc ccttaatata ttgagtgctt
2051 ccatgacaga tcctgcgttg agaaccttgg cgtacgtgtc gttggcagat
2101 tgctgacctc ctctagttga tctgccatcg atctggaaaa ctccatgatc
2151 aacgaagtct ccgtcttttt ccacgtatga tttgacatct gacgagctct
2201 tagctccctg tatgtttgga tggaaatgtg ctgacctact tggggagacg
2251 aggtcgaaga acttgttatt tttgcagttg tattttcctt cgaattggat
2301 gagcacgtgg agatgaggtt gcccatcttc gtgtagttct ctcgacacac
2351 gaatgaataa tttattagtt ggtgtgttta gggctaataa ttgggaaagt
2401 gcttcttctt tggaaagaga acagtgtgga tatgtcagaa aataattttt
2451 ggaatttact cggaaatgtc tgggcggtgg catatttgta ataatagttg
2501 ggcaccgatt ggggactctc taaacttgct ctagcaattg gggactgggg
2551 tcctatatat actagaaccc tctatagaac tttcaatctc gttcacacac
2601 gtggcggcca tcctatataa tatt