Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BrSP-2 coat protein gene, partial cds.

ACC No: KC748208

Dated: 2013-06-04 | Length: 924 | CRC: -650137959

                
ID   KC748208; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748208;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate BrSP-2 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (26-FEB-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="BrSP-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil:Itapira, Sao Paulo"
FT                   /collected_by="Douglas Rodriguez Martinez"
FT                   /collection_date="23-Feb-2011"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75827.1"
FT                   /translation="SRSVDDYQPVCGSNTHVFHQSKNEAVDAGLNEKRKEKEKQKEKEE
FT                   EKQKEKEKDNASDGNDVSTSTKAGERDRDVNVGTSGTFAVPRTKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQIMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGEAQVEYPIKPLIEHATPSFRQVMAHFSNAAEAYIAKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 321 A; 158 C; 225 G; 220 T; 0 other;

kc748208 Length: 924  04-JUN-2013  Type: N  Check: 5257  ..

       1  tcaaggagcg ttgatgatta tcaacctgtt tgtggcagca acacacatgt
      51  atttcatcag tccaaaaatg aagctgtgga tgctggttta aatgaaaagc
     101  gtaaagagaa agaaaaacaa aaagaaaaag aagaagaaaa acaaaaagag
     151  aaagaaaaag acaatgctag tgacggaaac gatgtgtcaa ctagcacaaa
     201  agctggagag agagacagag atgtcaatgt tgggaccagt ggaactttcg
     251  cagttccgag aacaaaatca tttactgata agatgatttt acctagaatt
     301  aagggaaaga ctgtccttaa tttaaatcat ctccttcagt ataatccgca
     351  acaaattgac atttctaaca ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcaa
     451  ataatgctaa atggcttgat ggtttggtgt atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaagct caggttgagt
     551  atccaatcaa gcctttaatt gagcatgcta ctccgtcatt taggcaagtc
     601  atggctcatt tcagtaacgc ggcagaagcg tacattgcaa agagaaatgc
     651  tactgaaagg tacatgccgc ggtatgggat caagaggaat ttgactgaca
     701  ttagcctcgc tagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc tcatatgcag atgaaagctg cagcgctgcg
     801  aaacactaat cgcagaatgt ttggcatgga tggcagtgtc agtaacaagg
     851  aagaaaacac ggagaggcac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga